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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A scalable analytical approach from bacterial genomes to epidemiology
Xavier Didelot, Julian Parkhill
Philosophical Transactions of the Royal Society B Biological Sciences (2022) Vol. 377, Iss. 1861
Open Access | Times Cited: 23

Showing 23 citing articles:

Epidemiological inference from pathogen genomes: A review of phylodynamic models and applications
Leo Featherstone, Joshua M Zhang, Timothy G. Vaughan, et al.
Virus Evolution (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 26
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host
Jake Carson, Matt J. Keeling, David Wyllie, et al.
Molecular Biology and Evolution (2024) Vol. 41, Iss. 1
Open Access | Times Cited: 5
Recombination Analysis of Geminiviruses Using Recombination Detection Program (RDP)
Alvin Crespo-Bellido, Darren P. Martin, Siobain Duffy
Methods in molecular biology (2025), pp. 125-143
Closed Access
Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent Model
Stephen A. Roberts, Richard G. Everitt, Jere Koskela, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 4, pp. e1012995-e1012995
Open Access
Estimating the fitness cost and benefit of antimicrobial resistance from pathogen genomic data
David Helekal, Matt J. Keeling, Yonatan H. Grad, et al.
Journal of The Royal Society Interface (2023) Vol. 20, Iss. 203
Open Access | Times Cited: 10
Model design for nonparametric phylodynamic inference and applications to pathogen surveillance
Xavier Didelot, Vinícius Bonetti Franceschi, Simon D. W. Frost, et al.
Virus Evolution (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 7
KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes
Matthew Moore, Mirjam Laager, Paolo Ribeca, et al.
PLoS Genetics (2024) Vol. 20, Iss. 4, pp. e1011184-e1011184
Open Access | Times Cited: 1
Estimating the fitness cost and benefit of antimicrobial resistance from pathogen genomic data
David Helekal, Matt J. Keeling, Yonatan H. Grad, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 5
Acquisition of a large virulence plasmid (pINV) promoted temperature-dependent virulence and global dispersal of O96:H19 enteroinvasive Escherichia coli
Sydney L. Miles, Vincenzo Torraca, Zoe A. Dyson, et al.
mBio (2023)
Open Access | Times Cited: 2
Phylogenetic Analysis of Bacterial Pathogen Genomes
Xavier Didelot
Methods in molecular biology (2023), pp. 87-99
Closed Access | Times Cited: 2
Scalable and versatile container-based pipelines for de novo genome assembly and bacterial annotation.
Felipe Marques de Almeida, Tatiana Amabile de Campos, Γεώργιος Παππάς
F1000Research (2023) Vol. 12, pp. 1205-1205
Open Access | Times Cited: 2
Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease
Xavier Didelot, David Helekal, Michelle Kendall, et al.
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 4
Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent Model
Stephen A. Roberts, Richard G. Everitt, Jere Koskela, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Incorporating epidemiological data into the genomic analysis of partially sampled infectious disease outbreaks
Jake Carson, Matt J. Keeling, Paolo Ribeca, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Genomic approaches to tuberculosis management and control
Iñaki Comas, Mariana G. López, Álvaro Chiner‐Oms, et al.
European Respiratory Society eBooks (2023)
Open Access | Times Cited: 1
Genomic population structures of microbial pathogens
Kathryn E. Holt, David M. Aanensen, Mark Achtman
Philosophical Transactions of the Royal Society B Biological Sciences (2022) Vol. 377, Iss. 1861
Open Access | Times Cited: 1
Inference of infectious disease transmission using multiple genomes per host
Jake Carson, Matt J. Keeling, David Wyllie, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
The inter-continental population dynamics ofNeisseria gonorrhoeae
Magnus N Osnes, Ola Brynildsrud, Kristian Alfsnes, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
Inference of multiple mergers while dating a pathogen phylogeny
David Helekal, Jere Koskela, Xavier Didelot
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
The cold-shock gene’s protein complex of different serogroups of Vibrio cholerae
Sergey O. Vodopyanov, Artem A. Gerasimenko, Alexey S. Vodopyanov, et al.
Вестник Пермского университета Серия «Биология»=Bulletin of Perm University Biology (2023), Iss. 2, pp. 166-171
Open Access
The inter-continental population dynamics of Neisseria gonorrhoeae
Magnus N Osnes, Ola Brynildsrud, Kristian Alfsnes, et al.
(2023)
Open Access
The inter-continental population dynamics of Neisseria gonorrhoeae
Magnus N Osnes, Ola Brynildsrud, Kristian Alfsnes, et al.
(2023)
Open Access
KmerAperture: Retainingk-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes
Matthew Moore, Mirjam Laager, Paolo Ribeca, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access
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