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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Pan-genome analyses of model fungal species
Charley McCarthy, David Fitzpatrick
Microbial Genomics (2019) Vol. 5, Iss. 2
Open Access | Times Cited: 97

Showing 1-25 of 97 citing articles:

The Ecology and Evolution of Pangenomes
Michael A. Brockhurst, Ellie Harrison, James P. J. Hall, et al.
Current Biology (2019) Vol. 29, Iss. 20, pp. R1094-R1103
Open Access | Times Cited: 290
Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications
Agnieszka A. Golicz, Philipp E. Bayer, Prem L. Bhalla, et al.
Trends in Genetics (2019) Vol. 36, Iss. 2, pp. 132-145
Open Access | Times Cited: 186
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Marco Gerdol, Rebeca Moreira, Fernando Cruz, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 139
Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae
Samuel O’Donnell, Jia‐Xing Yue, Omar Abou Saada, et al.
Nature Genetics (2023) Vol. 55, Iss. 8, pp. 1390-1399
Open Access | Times Cited: 67
A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
Thomas Badet, Ursula Oggenfuss, Leen Abraham, et al.
BMC Biology (2020) Vol. 18, Iss. 1
Open Access | Times Cited: 135
Fungal evolution: cellular, genomic and metabolic complexity
Miguel A. Naranjo‐Ortiz, Toni Gabaldón
Biological reviews/Biological reviews of the Cambridge Philosophical Society (2020) Vol. 95, Iss. 5, pp. 1198-1232
Open Access | Times Cited: 118
Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection
Amelia E. Barber, Tongta Sae-Ong, Kang Kang, et al.
Nature Microbiology (2021) Vol. 6, Iss. 12, pp. 1526-1536
Closed Access | Times Cited: 85
Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
Abigail Lind, Katherine S. Pollard
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 83
Facilitators of adaptation and antifungal resistance mechanisms in clinically relevant fungi
Margriet W.J. Hokken, Bas J. Zwaan, Willem J. G. Melchers, et al.
Fungal Genetics and Biology (2019) Vol. 132, pp. 103254-103254
Open Access | Times Cited: 76
Long reads and Hi‐C sequencing illuminate the two‐compartment genome of the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
Gökalp Yildirir, Jana Sperschneider, Mathu Malar C, et al.
New Phytologist (2021) Vol. 233, Iss. 3, pp. 1097-1107
Open Access | Times Cited: 61
The pan-genome of Aspergillus fumigatus provides a high-resolution view of its population structure revealing high levels of lineage-specific diversity driven by recombination
Lotus A. Lofgren, Brandon S. Ross, Robert A. Cramer, et al.
PLoS Biology (2022) Vol. 20, Iss. 11, pp. e3001890-e3001890
Open Access | Times Cited: 46
Recent advances in crustacean genomics and their potential application in aquaculture
Jianbo Yuan, Yang Yu, Xiaojun Zhang, et al.
Reviews in Aquaculture (2023) Vol. 15, Iss. 4, pp. 1501-1521
Closed Access | Times Cited: 27
Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen
Hongxin Chen, Robert C. King, Daniel P. Smith, et al.
BMC Biology (2023) Vol. 21, Iss. 1
Open Access | Times Cited: 25
Systematic identification of cargo-mobilizing genetic elements reveals new dimensions of eukaryotic diversity
Emile Gluck‐Thaler, Aaron A. Vogan
Nucleic Acids Research (2024) Vol. 52, Iss. 10, pp. 5496-5513
Open Access | Times Cited: 14
FungANI, a BLAST-based program for analyzing average nucleotide identity (ANI) between two fungal genomes, enables easy fungal species delimitation
Christophe Lalanne, Philippe Silar
Fungal Genetics and Biology (2025) Vol. 177, pp. 103969-103969
Closed Access | Times Cited: 1
Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus
Sarwar Azam, Abhisek Sahu, Naveen Kumar Pandey, et al.
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1
The rise and fall of genes: origins and functions of plant pathogen pangenomes
Thomas Badet, Daniel Croll
Current Opinion in Plant Biology (2020) Vol. 56, pp. 65-73
Open Access | Times Cited: 68
Lateral Gene Transfer Mechanisms and Pan-genomes in Eukaryotes
Shannon J. Sibbald, Laura Eme, John M. Archibald, et al.
Trends in Parasitology (2020) Vol. 36, Iss. 11, pp. 927-941
Open Access | Times Cited: 66
Microevolution in the pansecondary metabolome of Aspergillus flavus and its potential macroevolutionary implications for filamentous fungi
Milton T. Drott, Tomás A. Rush, Tatum R. Satterlee, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 21
Open Access | Times Cited: 48
A global phylogenomic analysis of the shiitake genus Lentinula
Sean Sierra-Patev, Byoungnam Min, Miguel A. Naranjo‐Ortiz, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 10
Open Access | Times Cited: 18
Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineages
A. Cristina Barragan, Sergio M. Latorre, Angus Malmgren, et al.
Molecular Biology and Evolution (2024) Vol. 41, Iss. 8
Open Access | Times Cited: 8
Indexing All Life’s Known Biological Sequences
Mikhail Karasikov, Harun Mustafa, Daniel Danciu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 44
Critical assessment of pan-genomic analysis of metagenome-assembled genomes
Tang Li, Yanbin Yin
Briefings in Bioinformatics (2022) Vol. 23, Iss. 6
Open Access | Times Cited: 27
Aspergillus flavus pangenome (AflaPan) uncovers novel aflatoxin and secondary metabolite associated gene clusters
Sunil S. Gangurde, Walid Korani, Prasad Bajaj, et al.
BMC Plant Biology (2024) Vol. 24, Iss. 1
Open Access | Times Cited: 5
Evolutionary origin and population diversity of a cryptic hybrid pathogen
Jacob L. Steenwyk, S E Knowles, Rafael Wesley Bastos, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
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