Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Fast and accurate protein structure search with Foldseek
Michel van Kempen, Stephanie Kim, Charlotte Tumescheit, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 248

Showing 1-25 of 248 citing articles:

Evolutionary-scale prediction of atomic-level protein structure with a language model
Zeming Lin, Halil Akin, Roshan Rao, et al.
Science (2023) Vol. 379, Iss. 6637, pp. 1123-1130
Open Access | Times Cited: 2121
Dali server: structural unification of protein families
Liisa Holm
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W210-W215
Open Access | Times Cited: 675
ProtGPT2 is a deep unsupervised language model for protein design
Noelia Ferruz, Steffen Schmidt, Birte Höcker
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 418
DALI shines a light on remote homologs: One hundred discoveries
Liisa Holm, Aleksi Laiho, Petri Törönen, et al.
Protein Science (2022) Vol. 32, Iss. 1
Open Access | Times Cited: 360
Database resources of the National Center for Biotechnology Information in 2023
Eric W Sayers, Evan Bolton, J. Rodney Brister, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D29-D38
Open Access | Times Cited: 337
Evolutionary-scale prediction of atomic level protein structure with a language model
Zeming Lin, Halil Akin, Roshan Rao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 257
Learning inverse folding from millions of predicted structures
Chloe Hsu, Robert Verkuil, Jason Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 240
Language models generalize beyond natural proteins
Robert Verkuil, Ori Kabeli, Yilun Du, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 127
What's next for AlphaFold and the AI protein-folding revolution
Ewen Callaway
Nature (2022) Vol. 604, Iss. 7905, pp. 234-238
Open Access | Times Cited: 118
PADLOC: a web server for the identification of antiviral defence systems in microbial genomes
Leighton Payne, Sean Meaden, Mario Rodríguez Mestre, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W541-W550
Open Access | Times Cited: 113
Simulating 500 million years of evolution with a language model
Thomas Hayes, Roshan Rao, Halil Akin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 89
SaProt: Protein Language Modeling with Structure-aware Vocabulary
Jin Su, Chenchen Han, Yuyang Zhou, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 84
The impact of AlphaFold Protein Structure Database on the fields of life sciences
Mihály Váradi, Sameer Velankar
PROTEOMICS (2022) Vol. 23, Iss. 17
Open Access | Times Cited: 80
Unifying the known and unknown microbial coding sequence space
Chiara Vanni, Matthew S. Schechter, Silvia G. Acinas, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 76
From sequence to function through structure: Deep learning for protein design
Noelia Ferruz, Michael Heinzinger, Mehmet Akdel, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 21, pp. 238-250
Open Access | Times Cited: 75
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, et al.
Communications Biology (2023) Vol. 6, Iss. 1
Open Access | Times Cited: 75
Mirusviruses link herpesviruses to giant viruses
Morgan Gaïa, Lingjie Meng, Éric Pelletier, et al.
Nature (2023) Vol. 616, Iss. 7958, pp. 783-789
Open Access | Times Cited: 73
Template-assisted covalent modification of DCAF16 underlies activity of BRD4 molecular glue degraders
Yen-Der Li, W Michelle, Muhammad Murtaza Hassan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 44
Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses
Christopher M. Bellas, Thomas Hackl, Marie-Sophie Plakolb, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 16
Open Access | Times Cited: 43
Integrating cellular electron microscopy with multimodal data to explore biology across space and time
Caitlyn L McCafferty, Sven Klumpe, Rommie E. Amaro, et al.
Cell (2024) Vol. 187, Iss. 3, pp. 563-584
Open Access | Times Cited: 41
Simulating 500 million years of evolution with a language model
Thomas Hayes, Roshan Rao, Halil Akin, et al.
Science (2025)
Open Access | Times Cited: 38
Design of highly functional genome editors by modeling the universe of CRISPR-Cas sequences
Jeffrey A. Ruffolo, Stephen Nayfach, Joseph P. Gallagher, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 36
CATH 2024: CATH-AlphaFlow Doubles the Number of Structures in CATH and Reveals Nearly 200 New Folds
Vaishali Waman, Nicola Bordin, Rachel Alcraft, et al.
Journal of Molecular Biology (2024) Vol. 436, Iss. 17, pp. 168551-168551
Open Access | Times Cited: 22
A Survey of K-mer Methods and Applications in Bioinformatics
Camille Moeckel, Manvita Mareboina, Maxwell A. Konnaris, et al.
Computational and Structural Biotechnology Journal (2024) Vol. 23, pp. 2289-2303
Open Access | Times Cited: 22
Viroid-like colonists of human microbiomes
Ivan N. Zheludev, R. C. Edgar, María José López-Galiano, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 18
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