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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Evolutionary-scale prediction of atomic level protein structure with a language model
Zeming Lin, Halil Akin, Roshan Rao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 257

Showing 1-25 of 257 citing articles:

AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences
Mihály Váradi, Damian Bertoni, Paulyna Magaña, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D368-D375
Open Access | Times Cited: 555
AlphaFold2 and its applications in the fields of biology and medicine
Zhenyu Yang, Xiaoxi Zeng, Yi Zhao, et al.
Signal Transduction and Targeted Therapy (2023) Vol. 8, Iss. 1
Open Access | Times Cited: 245
Before and after AlphaFold2: An overview of protein structure prediction
Letícia M. F. Bertoline, Angélica N. Lima, José Eduardo Krieger, et al.
Frontiers in Bioinformatics (2023) Vol. 3
Open Access | Times Cited: 151
Prediction of effector protein structures from fungal phytopathogens enables evolutionary analyses
Kyungyong Seong, Ksenia V. Krasileva
Nature Microbiology (2023) Vol. 8, Iss. 1, pp. 174-187
Open Access | Times Cited: 125
BepiPred‐3.0: Improved B‐cell epitope prediction using protein language models
Joakim Nøddeskov Clifford, Magnus Haraldson Høie, Sebastian Deleuran, et al.
Protein Science (2022) Vol. 31, Iss. 12
Open Access | Times Cited: 117
Computational and artificial intelligence-based methods for antibody development
Ji‐Sun Kim, Matthew McFee, Qiao Fang, et al.
Trends in Pharmacological Sciences (2023) Vol. 44, Iss. 3, pp. 175-189
Open Access | Times Cited: 89
Benchmarking Refined and Unrefined AlphaFold2 Structures for Hit Discovery
Yuqi Zhang, Márton Vass, Da Shi, et al.
Journal of Chemical Information and Modeling (2023) Vol. 63, Iss. 6, pp. 1656-1667
Closed Access | Times Cited: 68
Metagenomics: An Effective Approach for Exploring Microbial Diversity and Functions
Nguyễn Nhật Nam, Hoang Dang Khoa, Kieu The Loan Trinh, et al.
Foods (2023) Vol. 12, Iss. 11, pp. 2140-2140
Open Access | Times Cited: 65
xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein
Bo Chen, Xingyi Cheng, Li Pan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 59
Biasing AlphaFold2 to predict GPCRs and kinases with user-defined functional or structural properties
Davide Sala, Peter W. Hildebrand, Jens Meiler
Frontiers in Molecular Biosciences (2023) Vol. 10
Open Access | Times Cited: 56
Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes
Shoshana J. Wodak, Sándor Vajda, Marc F. Lensink, et al.
Annual Review of Biophysics (2023) Vol. 52, Iss. 1, pp. 183-206
Open Access | Times Cited: 42
DiscoTope-3.0: improved B-cell epitope prediction using inverse folding latent representations
Magnus Haraldson Høie, Frederik Steensgaard Gade, Julie Maria Johansen, et al.
Frontiers in Immunology (2024) Vol. 15
Open Access | Times Cited: 38
ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a language diffusion model
Bo Ni, David L. Kaplan, Markus J. Buehler
Science Advances (2024) Vol. 10, Iss. 6
Open Access | Times Cited: 18
Advancing Ligand Docking through Deep Learning: Challenges and Prospects in Virtual Screening
Xujun Zhang, Chao Shen, Haotian Zhang, et al.
Accounts of Chemical Research (2024) Vol. 57, Iss. 10, pp. 1500-1509
Closed Access | Times Cited: 16
RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances
Sebastian Bittrich, Charmi Bhikadiya, Chunxiao Bi, et al.
Journal of Molecular Biology (2023) Vol. 435, Iss. 14, pp. 167994-167994
Open Access | Times Cited: 41
Cross-linking mass spectrometry discovers, evaluates, and corroborates structures and protein–protein interactions in the human cell
Tara K. Bartolec, Xabier Vázquez-Campos, Alexander Norman, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 17
Open Access | Times Cited: 40
Transcription factor-based biosensors for screening and dynamic regulation
Jonathan Tellechea‐Luzardo, Martin T. Stiebritz, Pablo Carbonell
Frontiers in Bioengineering and Biotechnology (2023) Vol. 11
Open Access | Times Cited: 35
Geometric deep learning for drug discovery
Mingquan Liu, Chunyan Li, Ruizhe Chen, et al.
Expert Systems with Applications (2023) Vol. 240, pp. 122498-122498
Closed Access | Times Cited: 34
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
Maxim Zvyagin, Alexander Brace, Kyle Hippe, et al.
The International Journal of High Performance Computing Applications (2023) Vol. 37, Iss. 6, pp. 683-705
Open Access | Times Cited: 33
An end-to-end deep learning method for protein side-chain packing and inverse folding
Matt McPartlon, Jinbo Xu
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 23
Open Access | Times Cited: 32
A review of enzyme design in catalytic stability by artificial intelligence
Yongfan Ming, Wenkang Wang, Rui Yin, et al.
Briefings in Bioinformatics (2023) Vol. 24, Iss. 3
Closed Access | Times Cited: 29
Theoretical and Data-Driven Approaches for Biomolecular Condensates
Kadi L. Saar, Daoyuan Qian, Lydia L. Good, et al.
Chemical Reviews (2023) Vol. 123, Iss. 14, pp. 8988-9009
Open Access | Times Cited: 28
Efficient and scalablede novoprotein design using a relaxed sequence space
Christopher Frank, Ali Khoshouei, Yosta de Stigter, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Closed Access | Times Cited: 25
End-to-end protein–ligand complex structure generation with diffusion-based generative models
Shuya Nakata, Y. Mori, Shigenori Tanaka
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 25
Recent Developments in Ultralarge and Structure-Based Virtual Screening Approaches
Christoph Gorgulla
Annual Review of Biomedical Data Science (2023) Vol. 6, Iss. 1, pp. 229-258
Open Access | Times Cited: 24
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