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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue
Amanda Janesick, Robert Shelansky, Andrew D. Gottscho, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 121

Showing 1-25 of 121 citing articles:

Methods and applications for single-cell and spatial multi-omics
Katy Vandereyken, Alejandro Sifrim, Bernard Thienpont, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 494-515
Open Access | Times Cited: 606
Unsupervised spatially embedded deep representation of spatial transcriptomics
Hang Xu, Huazhu Fu, Yahui Long, et al.
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 126
Spatial transcriptomics: Technologies, applications and experimental considerations
Ye Wang, Bin Liu, Gexin Zhao, et al.
Genomics (2023) Vol. 115, Iss. 5, pp. 110671-110671
Open Access | Times Cited: 80
Inferring super-resolution tissue architecture by integrating spatial transcriptomics with histology
Daiwei Zhang, Amelia Schroeder, Hanying Yan, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 9, pp. 1372-1377
Closed Access | Times Cited: 68
Deciphering tumor ecosystems at super resolution from spatial transcriptomics with TESLA
Jian Hu, Kyle Coleman, Daiwei Zhang, et al.
Cell Systems (2023) Vol. 14, Iss. 5, pp. 404-417.e4
Open Access | Times Cited: 54
SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
Nature Methods (2024)
Open Access | Times Cited: 53
Stabilized mosaic single-cell data integration using unshared features
Shila Ghazanfar, Carolina Guibentif, John C. Marioni
Nature Biotechnology (2023) Vol. 42, Iss. 2, pp. 284-292
Open Access | Times Cited: 49
Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues
Huan Wang, Ruixu Huang, Jack Nelson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 46
Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows
Sergio Marco Salas, Paulo Czarnewski, Louis B. Kuemmerle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 44
A Comparative Analysis of Imaging-Based Spatial Transcriptomics Platforms
David P. Cook, Kirk B. Jensen, Kellie Wise, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 43
The implications of single-cell RNA-seq analysis in prostate cancer: unraveling tumor heterogeneity, therapeutic implications and pathways towards personalized therapy
Dechao Feng, Weizhen Zhu, Jie Wang, et al.
Military Medical Research (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 26
Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions
Kaishu Mason, Anuja Sathe, Paul R. Hess, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 17
spaCI: deciphering spatial cellular communications through adaptive graph model
Ziyang Tang, Tonglin Zhang, Baijian Yang, et al.
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Open Access | Times Cited: 52
Spatial-linked alignment tool (SLAT) for aligning heterogenous slices
Chen‐Rui Xia, Zhi‐Jie Cao, Xinming Tu, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 40
A guidebook of spatial transcriptomic technologies, data resources and analysis approaches
Liangchen Yue, Feng Liu, Jiongsong Hu, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 940-955
Open Access | Times Cited: 37
Spatial transcriptomics in development and disease
Ran Zhou, Gaoxia Yang, Yan Zhang, et al.
Molecular Biomedicine (2023) Vol. 4, Iss. 1
Open Access | Times Cited: 27
Voyager: exploratory single-cell genomics data analysis with geospatial statistics
Lambda Moses, Pétur Helgi Einarsson, Kayla Jackson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 25
Whole-genome sequencing reveals the molecular implications of the stepwise progression of lung adenocarcinoma
Yasuhiko Haga, Yoshitaka Sakamoto, Keiko Kajiya, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 25
Integrated single cell and unsupervised spatial transcriptomic analysis defines molecular anatomy of the human dorsolateral prefrontal cortex
Louise A. Huuki-Myers, Abby Spangler, Nicholas J. Eagles, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 24
Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets
Sean K. Maden, Sang Ho Kwon, Louise A. Huuki-Myers, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 24
Spatial transcriptomics deconvolution at single-cell resolution using Redeconve
Zixiang Zhou, Yunshan Zhong, Zemin Zhang, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 24
SpatialData: an open and universal data framework for spatial omics
Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 23
Single-Cell RNA Sequencing Technology Landscape in 2023
Hui‐Qi Qu, Charlly Kao, Hákon Hákonarson
Stem Cells (2023) Vol. 42, Iss. 1, pp. 1-12
Closed Access | Times Cited: 22
Integrated Spatial Transcriptomic and Proteomic Analysis of Fresh Frozen Tissue Based on Stereo-seq
Sha Liao, Yang Heng, Weiqing Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 21
Spatial transcriptomics: recent developments and insights in respiratory research
Wenjia Wang, Liuxi Chu, Liyong He, et al.
Military Medical Research (2023) Vol. 10, Iss. 1
Open Access | Times Cited: 20
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