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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics
Xiaojie Qiu, Daniel Y. Zhu, Jiajun Yao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 31

Showing 1-25 of 31 citing articles:

Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 52
Profiling cell identity and tissue architecture with single-cell and spatial transcriptomics
Gunsagar S. Gulati, Jeremy Philip D’Silva, Yunhe Liu, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 26, Iss. 1, pp. 11-31
Closed Access | Times Cited: 33
Spatiotemporal omics for biology and medicine
Longqi Liu, Ao Chen, Yuxiang Li, et al.
Cell (2024) Vol. 187, Iss. 17, pp. 4488-4519
Closed Access | Times Cited: 27
Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view
Junjie Zhu, Kun Pang, Beiyu Hu, et al.
Nature Genetics (2024)
Open Access | Times Cited: 12
Dissecting the brain with spatially resolved multi-omics
Yijia Fangma, Mengting Liu, Jie Liao, et al.
Journal of Pharmaceutical Analysis (2023) Vol. 13, Iss. 7, pp. 694-710
Open Access | Times Cited: 21
Unified fate mapping in multiview single-cell data
Philipp Weiler, Marius Lange, Michal Klein, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 17
Spatiotemporal metabolomic approaches to the cancer-immunity panorama: a methodological perspective
Yang Xiao, Yongsheng Li, Huakan Zhao
Molecular Cancer (2024) Vol. 23, Iss. 1
Open Access | Times Cited: 7
Cross-species single-cell spatial transcriptomic atlases of the cerebellar cortex
Shijie Hao, Xiaojia Zhu, Zhi Rui Huang, et al.
Science (2024) Vol. 385, Iss. 6716
Closed Access | Times Cited: 7
CellBin: a highly accurate single-cell gene expression processing pipeline for high-resolution spatial transcriptomics
Mei Li, Huanlin Liu, Qiang Kang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 13
Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem
Jiaji George Chen, Joselyn Cristina Chávez-Fuentes, Matthew O’Brien, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 13
VT3D: a visualization toolbox for 3D transcriptomic data
Lidong Guo, Yao Li, Yanwei Qi, et al.
Journal of genetics and genomics/Journal of Genetics and Genomics (2023) Vol. 50, Iss. 9, pp. 713-719
Open Access | Times Cited: 11
Spatial transition tensor of single cells
Peijie Zhou, Federico Bocci, Tiejun Li, et al.
Nature Methods (2024) Vol. 21, Iss. 6, pp. 1053-1062
Open Access | Times Cited: 4
Spatial omics advances for in situ RNA biology
Jingyi Ren, Shuchen Luo, Hailing Shi, et al.
Molecular Cell (2024)
Closed Access | Times Cited: 4
Scalable image-based visualization and alignment of spatial transcriptomics datasets
Stephan Preibisch, Michael Innerberger, Daniel León-Periñán, et al.
Cell Systems (2025), pp. 101264-101264
Open Access
Bering:joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings
Kang Jin, Zuobai Zhang, Ke Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Spatial and single-nucleus transcriptomics decoding the molecular landscape and cellular organization of avian optic tectum
Kuo Liao, Ya Xiang, Fubaoqian Huang, et al.
iScience (2024) Vol. 27, Iss. 2, pp. 109009-109009
Open Access | Times Cited: 2
Protocol for enhancing visualization clarity for categorical spatial datasets using Spaco
Zehua Jing, Bolin Yang, Yinqi Bai
STAR Protocols (2024) Vol. 5, Iss. 2, pp. 103062-103062
Open Access | Times Cited: 2
stVCR: Reconstructing spatio-temporal dynamics of cell development using optimal transport
Qiangwei Peng, Peijie Zhou, Tiejun Li
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Spatiotemporal transcriptome atlas of human embryos after gastrulation
Jiexue Pan, Yuejiao Li, Zhongliang Lin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
A single-cell 3D spatiotemporal multi-omics atlas fromDrosophilaembryogenesis to metamorphosis
Mingyue Wang, Qinan Hu, Zhencheng Tu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
A dynamical perspective: moving towards mechanism in single-cell transcriptomics
Rory J. Maizels
Philosophical Transactions of the Royal Society B Biological Sciences (2024) Vol. 379, Iss. 1900
Open Access | Times Cited: 1
Three-dimension transcriptomics maps of whole mouse embryo during organogenesis
Mengnan Cheng, Huiwen Zheng, Qi Fang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
ST-GEARS: Advancing 3D downstream research through accurate spatial information recovery
Tianyi Xia, Luni Hu, Lulu Zuo, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 1
Image-based representation of massive spatial transcriptomics datasets
Stephan Preibisch, Michael Innerberger, Daniel León-Periñán, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Closed Access | Times Cited: 10
Integrative mapping of spatial transcriptomic and amyloid pathology in Alzheimer’s disease at single-cell resolution
Guangwei Zhang, Shangzhou Xia, Nicole K. Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 2
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