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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Language models generalize beyond natural proteins
Robert Verkuil, Ori Kabeli, Yilun Du, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 127

Showing 1-25 of 127 citing articles:

Simulating 500 million years of evolution with a language model
Thomas Hayes, Roshan Rao, Halil Akin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 89
De novo protein design—From new structures to programmable functions
Tanja Kortemme
Cell (2024) Vol. 187, Iss. 3, pp. 526-544
Open Access | Times Cited: 85
Machine learning for functional protein design
Pascal Notin, Nathan Rollins, Yarin Gal, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 2, pp. 216-228
Closed Access | Times Cited: 84
Accelerating the integration of ChatGPT and other large‐scale AI models into biomedical research and healthcare
Ding‐Qiao Wang, Long‐Yu Feng, Jinguo Ye, et al.
MedComm – Future Medicine (2023) Vol. 2, Iss. 2
Open Access | Times Cited: 81
Opportunities and Challenges for Machine Learning-Assisted Enzyme Engineering
Jason Yang, Francesca-Zhoufan Li, Frances H. Arnold
ACS Central Science (2024) Vol. 10, Iss. 2, pp. 226-241
Open Access | Times Cited: 70
Protein generation with evolutionary diffusion: sequence is all you need
Sarah Alamdari, Nitya Thakkar, Rianne van den Berg, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 64
Bilingual Language Model for Protein Sequence and Structure
Michael Heinzinger, Konstantin Weißenow, Joaquin Gomez Sanchez, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 62
xTrimoPGLM: Unified 100B-Scale Pre-trained Transformer for Deciphering the Language of Protein
Bo Chen, Xingyi Cheng, Li Pan, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 59
A new age in protein design empowered by deep learning
Hamed Khakzad, Ilia Igashov, Arne Schneuing, et al.
Cell Systems (2023) Vol. 14, Iss. 11, pp. 925-939
Open Access | Times Cited: 47
Opportunities and challenges in design and optimization of protein function
Dina Listov, Casper A. Goverde, Bruno E. Correia, et al.
Nature Reviews Molecular Cell Biology (2024) Vol. 25, Iss. 8, pp. 639-653
Closed Access | Times Cited: 41
Simulating 500 million years of evolution with a language model
Thomas Hayes, Roshan Rao, Halil Akin, et al.
Science (2025)
Open Access | Times Cited: 38
Sparks of function by de novo protein design
Alexander E. Chu, Tianyu Lu, Po‐Ssu Huang
Nature Biotechnology (2024) Vol. 42, Iss. 2, pp. 203-215
Closed Access | Times Cited: 31
Computational scoring and experimental evaluation of enzymes generated by neural networks
Sean R. Johnson, Xiaozhi Fu, Sandra Viknander, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 25
Computational design of soluble and functional membrane protein analogues
Casper A. Goverde, Martin Pačesa, Nicolas Goldbach, et al.
Nature (2024) Vol. 631, Iss. 8020, pp. 449-458
Open Access | Times Cited: 25
Bilingual language model for protein sequence and structure
Michael Heinzinger, Konstantin Weißenow, Joaquin Gomez Sanchez, et al.
NAR Genomics and Bioinformatics (2024) Vol. 6, Iss. 4
Open Access | Times Cited: 25
Protein language models are biased by unequal sequence sampling across the tree of life
Frances Ding, Jacob Steinhardt
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 23
Multistate and functional protein design using RoseTTAFold sequence space diffusion
Sidney Lisanza, Jacob Merle Gershon, S. Tipps, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 22
An all-atom protein generative model
Alexander E. Chu, Jinho Kim, Lucy Cheng, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 27
Open Access | Times Cited: 18
AI-Driven Deep Learning Techniques in Protein Structure Prediction
Lingtao Chen, Qiaomu Li, Kazi Fahim Ahmad Nasif, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 15, pp. 8426-8426
Open Access | Times Cited: 17
Local structural flexibility drives oligomorphism in computationally designed protein assemblies
Alena Khmelinskaia, Neville P. Bethel, Farzad Fatehi, et al.
Nature Structural & Molecular Biology (2025)
Open Access | Times Cited: 2
Self-play reinforcement learning guides protein engineering
Yi Wang, Hui Tang, Lichao Huang, et al.
Nature Machine Intelligence (2023) Vol. 5, Iss. 8, pp. 845-860
Closed Access | Times Cited: 34
Structure-informed Language Models Are Protein Designers
Zaixiang Zheng, Yifan Deng, Dongyu Xue, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 33
Assessing the limits of zero-shot foundation models in single-cell biology
Katarzyna Kedzierska, Lorin Crawford, Ava P. Amini, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 32
Computational Scoring and Experimental Evaluation of Enzymes Generated by Neural Networks
Sean R. Johnson, Xiaozhi Fu, Sandra Viknander, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 27
Efficient and scalablede novoprotein design using a relaxed sequence space
Christopher Frank, Ali Khoshouei, Yosta de Stigter, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Closed Access | Times Cited: 25
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