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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Efficient and scalablede novoprotein design using a relaxed sequence space
Christopher Frank, Ali Khoshouei, Yosta de Stigter, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Closed Access | Times Cited: 25

Showing 25 citing articles:

De novo design of protein structure and function with RFdiffusion
Joseph L. Watson, David Juergens, Nathaniel R. Bennett, et al.
Nature (2023) Vol. 620, Iss. 7976, pp. 1089-1100
Open Access | Times Cited: 736
Efficient and accurate prediction of protein structure using RoseTTAFold2
Minkyung Baek, Ivan Anishchenko, Ian R. Humphreys, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 97
Sparks of function by de novo protein design
Alexander E. Chu, Tianyu Lu, Po‐Ssu Huang
Nature Biotechnology (2024) Vol. 42, Iss. 2, pp. 203-215
Closed Access | Times Cited: 31
Rapid and automated design of two-component protein nanomaterials using ProteinMPNN
Robbert J. de Haas, Natalie Brunette, Alex Goodson, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 13
Open Access | Times Cited: 17
Joint Generation of Protein Sequence and Structure with RoseTTAFold Sequence Space Diffusion
Sidney Lisanza, Jake Merle Gershon, S. Tipps, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 38
Rationally seeded computational protein design of ɑ-helical barrels
Katherine I. Albanese, Rokas Petrenas, Fabio Pirro, et al.
Nature Chemical Biology (2024) Vol. 20, Iss. 8, pp. 991-999
Open Access | Times Cited: 10
Protein Design Using Structure-Prediction Networks: AlphaFold and RoseTTAFold as Protein Structure Foundation Models
Jue Wang, Joseph L. Watson, Sidney L. Lisanza
Cold Spring Harbor Perspectives in Biology (2024) Vol. 16, Iss. 7, pp. a041472-a041472
Closed Access | Times Cited: 9
Computational design of soluble functional analogues of integral membrane proteins
Casper A. Goverde, Martin Pačesa, Nicolas Goldbach, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 19
Integrated structure prediction of protein–protein docking with experimental restraints using ColabDock
Shi-Hao Feng, Zhen‐Yu Chen, Chengwei Zhang, et al.
Nature Machine Intelligence (2024) Vol. 6, Iss. 8, pp. 924-935
Closed Access | Times Cited: 8
Design of Cyclic Peptides Targeting Protein–Protein Interactions Using AlphaFold
Takatsugu Kosugi, Masahito Ohue
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 17, pp. 13257-13257
Open Access | Times Cited: 15
ESMFold Hallucinates Native-Like Protein Sequences
Jeliazko R. Jeliazkov, Diego del Alamo, Joel Karpiak
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 12
Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
Patrick Bryant, Frank Noé
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 12
Design of linear and cyclic peptide binders of different lengths only from a protein target sequence
Q. Li, Efstathios Nikolaos Vlachos, Patrick Bryant
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Parametrically guided design of beta barrels and transmembrane nanopores using deep learning
David E. Kim, Joseph L. Watson, David Juergens, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 4
Plasticity of BioPhi-Driven Humanness Optimization in ScFv-CD99 Binding Affinity Validated Through AlphaFold, HADDOCK, and MD Simulations
Kanokporn Sornsuwan, Thanathat Pamonsupornwichit, On-anong Juntit, et al.
Computational and Structural Biotechnology Journal (2025) Vol. 27, pp. 369-382
Open Access
Click, Compute, Create: A Review of Web‐based Tools for Enzyme Engineering
Adrian Tripp, Markus Braun, Florian Wieser, et al.
ChemBioChem (2024)
Open Access | Times Cited: 3
ColabDock: inverting AlphaFold structure prediction model for protein-protein docking with experimental restraints
Shi-Hao Feng, Zhen‐Yu Chen, Chengwei Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
Rapid and automated design of two-component protein nanomaterials using ProteinMPNN
Robbert J. de Haas, Natalie Brunette, Alexander M.C. Goodson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
AI tools are designing entirely new proteins that could transform medicine
Ewen Callaway
Nature (2023) Vol. 619, Iss. 7969, pp. 236-238
Closed Access | Times Cited: 5
Generalized design of sequence-ensemble-function relationships for intrinsically disordered proteins
Ryan Krueger, Michael P. Brenner, Krishna Shrinivas
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Design of Cyclic Peptides Targeting Protein-Protein Interactions using AlphaFold
Takatsugu Kosugi, Masahito Ohue
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Protein Language Model Supervised Precise and Efficient Protein Backbone Design Method
Bo Zhang, Kexin Liu, Zhuoqi Zheng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 3
Scaffold-Lab: Critical Evaluation and Ranking of Protein Backbone Generation Methods in A Unified Framework
Zhuoqi Zheng, Bo Zhang, Bozitao Zhong, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
A Unified Framework of Scaffold-Lab for Critical Assessment of Protein Backbone Generation Methods
Haifeng Chen, Zhuoqi Zheng, Bo Zhang, et al.
Research Square (Research Square) (2024)
Open Access
Rationally seeded computational protein design
Katherine I. Albanese, Rokas Petrenas, Fabio Pirro, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
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