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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

You can move, but you can't hide: identification of mobile genetic elements with geNomad
Antônio Pedro Camargo, Simon Roux, Frederik Schulz, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 46

Showing 1-25 of 46 citing articles:

Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods
Bridget Hegarty, James A. Riddell, Eric Bastien, et al.
mSystems (2024) Vol. 9, Iss. 3
Open Access | Times Cited: 6
Hiding in plain sight: The discovery of complete genomes of 11 hypothetical spindle‐shaped viruses that putatively infect mesophilic ammonia‐oxidizing archaea
Yimin Ni, Tianqi Xu, Shuling Yan, et al.
Environmental Microbiology Reports (2024)
Open Access | Times Cited: 5
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires
Marie C. Schoelmerich, Lynn Ly, Jacob West-Roberts, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
Xi Chen, Xiaole Yin, Xianghui Shi, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 5
Terabase-Scale Coassembly of a Tropical Soil Microbiome
Robert Riley, Robert M. Bowers, Antônio Pedro Camargo, et al.
Microbiology Spectrum (2023) Vol. 11, Iss. 4
Open Access | Times Cited: 11
Phages are unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis
Cole B. Matrishin, Elaine M. Haase, Floyd E. Dewhirst, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 11
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
Byron J. Smith, Chunyu Zhao, Veronika Dubinkina, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Exploring the roles of ribosomal peptides in prokaryote-phage interactions through deep learning-enabled metagenome mining
Ying Gao, Zhong Zheng, Dengwei Zhang, et al.
Microbiome (2024) Vol. 12, Iss. 1
Open Access | Times Cited: 4
Potential Viral Influence on Sulfur Metabolism in Acid Sulfate Soils
Li Bi, Shuai Du, R. W. Fitzpatrick, et al.
Soil Biology and Biochemistry (2025) Vol. 205, pp. 109773-109773
Open Access
Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils
Tatiana A. Demina, Heli Marttila, Igor Stelmach Pessi, et al.
Microbiome (2025) Vol. 13, Iss. 1
Open Access
Quantifying the impact of workshops promoting microbiome data standards and data stewardship
Julia M. Kelliher, Francisca E. Rodriguez, L. Johnson, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Unveiling plasmid diversity and functionality in pristine groundwater
Olga M. Pérez-Carrascal, Akbar Adjie Pratama, Matthew B. Sullivan, et al.
Environmental Microbiome (2025) Vol. 20, Iss. 1
Open Access
High-quality metagenome assembly from nanopore reads with nanoMDBG
Gaëtan Benoit, Robert James, Sébastien Raguideau, et al.
(2025)
Open Access
Genomic insights into host–Endozoicomonadaceae cophylogeny
Zhuang Shao, Jian Zhang, Jiaxin Li, et al.
Microbial Genomics (2025) Vol. 11, Iss. 4
Open Access
Pangenomics to understand prophage dynamics in the Pectobacterium genus and the radiating lineages of Pectobacterium brasiliense
Lakhansing Pardeshi, Inge van Duivenbode, Michiel J. C. Pel, et al.
Microbial Genomics (2025) Vol. 11, Iss. 5
Open Access
An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny
Evgenia Dikareva, Dollwin Matharu, Emilia Lahtinen, et al.
Frontiers in Microbiology (2023) Vol. 14
Open Access | Times Cited: 7
Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome
Jaime G Lopez, Saria McKeithen-Mead, Handuo Shi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires
Marie C. Schoelmerich, Lynn Ly, Jacob West-Roberts, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 6
Large language models improve annotation of viral proteins
Libusha Kelly, Zachary Flamholz, Steven J. Biller
Research Square (Research Square) (2023)
Open Access | Times Cited: 5
Efficient and accurate detection of viral sequences at single-cell resolution reveals putative novel viruses perturbing host gene expression
Laura Luebbert, Delaney K. Sullivan, Maria Carilli, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family
Tomás Alarcón-Schumacher, Dominik Lücking, Susanne Erdmann
PLoS Genetics (2023) Vol. 19, Iss. 10, pp. e1010998-e1010998
Open Access | Times Cited: 4
Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
Lauren Michelle Lui, Torben Nielsen
mSystems (2024) Vol. 9, Iss. 9
Open Access | Times Cited: 1
Mobilome impacts on physiology in the widely used non-toxic mutant Microcystis aeruginosa PCC 7806 ΔmcyB and toxic wildtype
Gwendolyn F. Stark, Alexander R. Truchon, Steven W. Wilhelm
BMC Genomics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 1
Forty-nine metagenomic-assembled genomes from an aquatic virome expand Caudoviricetes by 45 potential new families and the newly uncovered Gossevirus of Bamfordvirae
Yimin Ni, Ting Chu, Shuling Yan, et al.
Journal of General Virology (2024) Vol. 105, Iss. 3
Closed Access | Times Cited: 1
DeepMicroClass sorts metagenomes into prokaryotes, eukaryotes and viruses, with marine applications
Shengwei Hou, Tianqi Tang, Siliangyu Cheng, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 9
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