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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

High-resolution spatial multi-omics reveals cell-type specific nuclear compartments
Yodai Takei, Yujing Yang, Jonathan A. White, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 25

Showing 25 citing articles:

Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data
Maria Carilli, Gennady Gorin, Yongin Choi, et al.
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1466-1469
Closed Access | Times Cited: 16
Lifelong restructuring of 3D genome architecture in cerebellar granule cells
Longzhi Tan, Jenny Shi, Siavash Moghadami, et al.
Science (2023) Vol. 381, Iss. 6662, pp. 1112-1119
Open Access | Times Cited: 38
Computational methods for analysing multiscale 3D genome organization
Yang Zhang, Lorenzo Boninsegna, Muyu Yang, et al.
Nature Reviews Genetics (2023) Vol. 25, Iss. 2, pp. 123-141
Open Access | Times Cited: 36
Simultaneous CRISPR screening and spatial transcriptomics reveal intracellular, intercellular, and functional transcriptional circuits
Loïc Binan, Aiping Jiang, Serwah Danquah, et al.
Cell (2025)
Open Access | Times Cited: 1
Simultaneous CRISPR screening and spatial transcriptomics reveals intracellular, intercellular, and functional transcriptional circuits
Loïc Binan, Serwah Danquah, Vera Valakh, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 18
Enablers and challenges of spatial omics, a melting pot of technologies
Theodore Alexandrov, Julio Sáez-Rodríguez, Sinem K. Saka
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 17
Histone 4 lysine 20 tri-methylation: a key epigenetic regulator in chromatin structure and disease
Alejandra Agredo, Andrea L. Kasinski
Frontiers in Genetics (2023) Vol. 14
Open Access | Times Cited: 13
Advances in the multimodal analysis of the 3D chromatin structure and gene regulation
Man-Hyuk Han, Jihyun Park, Minhee Park
Experimental & Molecular Medicine (2024) Vol. 56, Iss. 4, pp. 763-771
Open Access | Times Cited: 4
Nuclear speckle biology: At the cross-roads of discovery and functional analysis
Pankaj Chaturvedi, Andrew S. Belmont
Current Opinion in Cell Biology (2024) Vol. 91, pp. 102438-102438
Open Access | Times Cited: 4
Unveiling the role of chromosome structure morphology on gene function through chromosome conformation analysis
Yuxiang Zhan, Aslı Yıldırım, Lorenzo Boninsegna, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Super-resolving chromatin in its own terms: Recent approaches to portray genomic organization
Manuel Fernández, Maria Pia Cosma, Maria Victoria Neguembor
Current Opinion in Structural Biology (2025) Vol. 92, pp. 103021-103021
Closed Access
Gene expression and chromatin state mapped in space
Enric Llorens-Bobadilla
Nature Protocols (2025)
Closed Access
Deregulated enhancer‐promoter communication in cancer through altered nuclear architecture
Isabelle Seufert, Claire Vargas, Sina Jasmin Wille, et al.
International Journal of Cancer (2025)
Open Access
CellLoop: Identifying single-cell 3D genome chromatin loops
Yusen Ye, Yuxuan Hu, Shihua Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Charting the tumor microenvironment with spatial profiling technologies
Mattia Toninelli, Grazisa Rossetti, Massimiliano Pagani
Trends in cancer (2023) Vol. 9, Iss. 12, pp. 1085-1096
Open Access | Times Cited: 10
Single-Cell Epigenomics and Proteomics Methods Integrated in Multiomics
Haiyue Bi, Xiaocheng Weng
Fundamental Research (2024)
Open Access | Times Cited: 2
Regulating epithelial-mesenchymal plasticity from 3D genome organization
Qing You Pang, Yi-Chia Chiu, Ruby Yun‐Ju Huang
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 2
Spatial analysis by current multiplexed imaging technologies for the molecular characterisation of cancer tissues
Takashi Semba, Takatsugu Ishimoto
British Journal of Cancer (2024) Vol. 131, Iss. 11, pp. 1737-1747
Open Access | Times Cited: 2
Genome-wide tracing to decipher nuclear organization
Victoria Flores, Irene Farabella, Guy Nir
Current Opinion in Cell Biology (2023) Vol. 82, pp. 102175-102175
Closed Access | Times Cited: 4
Toward a comprehensive view of gene architecture during transcription
Marcus A. Woodworth, Melike Lakadamyali
Current Opinion in Genetics & Development (2024) Vol. 85, pp. 102154-102154
Closed Access | Times Cited: 1
Image-based 3D genomics through chromatin tracing
Tianqi Yang, Siyuan Wang
Nature Reviews Methods Primers (2024) Vol. 4, Iss. 1
Closed Access | Times Cited: 1
Image Analysis Protocol for DNA/RNA/Immunofluorescence (IF)-seqFISH Data
Hiroaki Ohishi, Hiroshi Ochiai
Methods in molecular biology (2024), pp. 419-432
Closed Access
CRISPR screening meets spatial omics: Opportunities and challenges
Yinxing Ma
Elsevier eBooks (2024)
Closed Access
MEGA-FISH: Multi-omics Extensible GPU-Accelerated FISH Processing Framework for Huge-Scale Spatial Omics
Yuma Ito, Kosuke Tomimatsu, Masao Nagasaki, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Interchromosomal Colocalization with Parental Genes Is Linked to the Function and Evolution of Mammalian Retrocopies
Yubin Yan, Yuhan Tian, Zefeng Wu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
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