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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency
Surag Nair, Mohamed Ameen, Laksshman Sundaram, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 21

Showing 21 citing articles:

A foundation model of transcription across human cell types
Xi Fu, Shentong Mo, Alejandro Buendia, et al.
Nature (2025) Vol. 637, Iss. 8047, pp. 965-973
Open Access | Times Cited: 5
Evaluating the representational power of pre-trained DNA language models for regulatory genomics
Ziqi Tang, Nikunj V. Somia, Yiyang Yu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 12
ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants
Anusri Pampari, Anna Shcherbina, Evgeny Z. Kvon, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
Proliferation history and transcription factor levels drive direct conversion to motor neurons
Nathan Wang, Brittany A Lende-Dorn, Adam M. Beitz, et al.
Cell Systems (2025), pp. 101205-101205
Closed Access | Times Cited: 1
SegmentNT: annotating the genome at single-nucleotide resolution with DNA foundation models
Bernardo P. de Almeida, Hugo Dalla-Torre, Guillaume Richard, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 8
Rewriting regulatory DNA to dissect and reprogram gene expression
Gabriella E. Martyn, Michael T. Montgomery, H. Spencer Jones, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
Interpreting the CTCF-mediated sequence grammar of genome folding with AkitaV2
Paulina N. Smaruj, Fahad Kamulegeya, David R. Kelley, et al.
PLoS Computational Biology (2025) Vol. 21, Iss. 2, pp. e1012824-e1012824
Open Access
Unlocking regeneration: how partial reprogramming resembles tissue healing
Melissa T. Adams, Heinrich Jasper, Lluc Mosteiro
Current Opinion in Genetics & Development (2025) Vol. 93, pp. 102351-102351
Open Access
Synthetic tunable promoters for flexible control of multi-gene expression in mammalian cells
Zong-Heng Fu, Siwei Cheng, Jiawei Li, et al.
Journal of Advanced Research (2025)
Open Access
Hypertranscription of rDNA Responsible for Nucleolar Remodelling is a Doorman for Acquiring Pluripotency
Yuchen Sun, Xinglin Hu, Xingwei Huang, et al.
Cell Proliferation (2025)
Open Access
Designing DNA With Tunable Regulatory Activity Using Discrete Diffusion
Anirban Sarkar, Ziqi Tang, Chris Zhao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
A pattern emerges in chromatin aging: AP-1 steals the show
Cian J. Lynch, Laia Richart, Manuel Serrano
Cell Metabolism (2024) Vol. 36, Iss. 8, pp. 1639-1641
Closed Access | Times Cited: 2
Proliferation history and transcription factor levels drive direct conversion
Nathan Wang, Brittany A Lende-Dorn, Honour O Adewumi, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 5
Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states
Alan E Murphy, Aydan Askarova, Boris Lenhard, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Interpreting the CTCF-mediated sequence grammar of genome folding with AkitaV2
Paulina N. Smaruj, Fahad Kamulegeya, David R. Kelley, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Progress in multifactorial single-cell chromatin profiling methods
Tim Stuart
Biochemical Society Transactions (2024) Vol. 52, Iss. 4, pp. 1827-1839
Open Access
Systems immunology approaches to study T cells in health and disease
Aaron Yang, Amanda C. Poholek
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access
Jade1 and the HBO1 complex are spatial-selective cofactors of Oct4
Yifan Wu, Asit Manna, Li Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states
Alan E Murphy, Aydan Askarova, Boris Lenhard, et al.
Nucleic Acids Research (2024)
Open Access
RegVelo: gene-regulatory-informed dynamics of single cells
W. Wang, Zhiyuan Hu, Philipp Weiler, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Epigenome Analysis
Dinesh Mondal, Shweta Ramdas
Elsevier eBooks (2024)
Closed Access
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