Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Small-molecule binding and sensing with a designed protein family
Gyu Rie Lee, Samuel J. Pellock, Christoffer Norn, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 18

Showing 18 citing articles:

Generalized biomolecular modeling and design with RoseTTAFold All-Atom
Rohith Krishna, Jue Wang, Woody Ahern, et al.
Science (2024) Vol. 384, Iss. 6693
Open Access | Times Cited: 335
Machine learning for functional protein design
Pascal Notin, Nathan Rollins, Yarin Gal, et al.
Nature Biotechnology (2024) Vol. 42, Iss. 2, pp. 216-228
Closed Access | Times Cited: 94
Atomic context-conditioned protein sequence design using LigandMPNN
Justas Dauparas, Gyu Rie Lee, Robert Pecoraro, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 46
De novo design of drug-binding proteins with predictable binding energy and specificity
Lei Lü, Xuxu Gou, Sophia K. Tan, et al.
Science (2024) Vol. 384, Iss. 6691, pp. 106-112
Open Access | Times Cited: 22
Binding and sensing diverse small molecules using shape-complementary pseudocycles
Linna An, Meerit Y. Said, Long Tran, et al.
Science (2024) Vol. 385, Iss. 6706, pp. 276-282
Closed Access | Times Cited: 15
Protein Design Using Structure-Prediction Networks: AlphaFold and RoseTTAFold as Protein Structure Foundation Models
Jue Wang, Joseph L. Watson, Sidney L. Lisanza
Cold Spring Harbor Perspectives in Biology (2024) Vol. 16, Iss. 7, pp. a041472-a041472
Closed Access | Times Cited: 9
De Novo Design of Proteins That Bind Naphthalenediimides, Powerful Photooxidants with Tunable Photophysical Properties
Samuel I. Mann, Zhi Lin, Sophia K. Tan, et al.
Journal of the American Chemical Society (2025) Vol. 147, Iss. 9, pp. 7849-7858
Open Access | Times Cited: 1
Atomic context-conditioned protein sequence design using LigandMPNN
Justas Dauparas, Gyu Rie Lee, Robert Pecoraro, et al.
Nature Methods (2025)
Open Access | Times Cited: 1
De novo design of diverse small molecule binders and sensors using Shape Complementary Pseudocycles
Linna An, Meerit Y. Said, Long Tran, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 11
Computational protein design
Katherine I. Albanese, Sophie Barbe, Derek N. Woolfson, et al.
Nature Reviews Methods Primers (2025) Vol. 5, Iss. 1
Open Access
A Designed Zn2+ Sensor Domain Transmits Binding Information to Transmembrane Histidine Kinases
A. Katherine Hatstat, Rian Kormos, Vee Xu, et al.
Journal of the American Chemical Society (2025)
Open Access
Modeling protein-small molecule conformational ensembles with ChemNet
Ivan Anishchenko, Yakov Kipnis, Indrek Kalvet, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Cutting-edge Computational Approaches in Enzyme Design and Activity Enhancement
Ruobin Sun, Dan Wu, Pengcheng Chen, et al.
Biochemical Engineering Journal (2024) Vol. 212, pp. 109510-109510
Closed Access | Times Cited: 3
Efficient generation of protein pockets with PocketGen
Zaixi Zhang, Wan Xiang Shen, Qi Liu, et al.
Nature Machine Intelligence (2024) Vol. 6, Iss. 11, pp. 1382-1395
Open Access | Times Cited: 3
PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets
Zaixi Zhang, Wan Xiang Shen, Qi Liu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Peptide sequencing via reverse translation of peptides into DNA
Liwei Zheng, Yujia Sun, Michael Eisenstein, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Rationalizing diverse binding mechanisms to the same protein fold: in-sights for ligand recognition and biosensor design
Alison C. Leonard, Anika J. Friedman, Rachel Chayer, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Rationalizing Diverse Binding Mechanisms to the Same Protein Fold: Insights for Ligand Recognition and Biosensor Design
Alison C. Leonard, Anika J. Friedman, Rachel Chayer, et al.
ACS Chemical Biology (2024) Vol. 19, Iss. 8, pp. 1757-1772
Closed Access
A designed Zn2+sensor domain transmits binding information to transmembrane histidine kinases
A. Katherine Hatstat, Rian Kormos, Vee Xu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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