Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

ATOM-1: A Foundation Model for RNA Structure and Function Built on Chemical Mapping Data
Nicholas Boyd, Brandon Anderson, Brent Townshend, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 12

Showing 12 citing articles:

Ribonanza: deep learning of RNA structure through dual crowdsourcing
Shujun He, Rui Huang, Jill Townley, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 9
RNA function follows form – why is it so hard to predict?
Diana Kwon
Nature (2025) Vol. 639, Iss. 8056, pp. 1106-1108
Closed Access | Times Cited: 1
Language models enable zero-shot prediction of RNA secondary structures including pseudoknots
Tiansu Gong, Dongbo Bu
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Advances in the field of RNA 3D structure prediction and modeling, with purely theoretical approaches, and with the use of experimental data
Sunandan Mukherjee, S. Naeim Moafinejad, Nagendar Goud Badepally, et al.
Structure (2024)
Closed Access | Times Cited: 5
RNA Sequence Analysis Landscape: A Comprehensive Review of Task Types, Databases, Datasets, Word Embedding Methods, and Language Models
Muhammad Nabeel Asim, Muhammad Ali Ibrahim, Tayyaba Asif, et al.
Heliyon (2025) Vol. 11, Iss. 2, pp. e41488-e41488
Open Access
Improving RNA Secondary Structure Prediction Through Expanded Training Data
Conner J. Langeberg, Tae-Han Kim, R E Nagle, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Comprehensive translational profiling and STE AI uncover rapid control of protein biosynthesis during cell stress
Attila Horváth, Yoshika Janapala, Katrina Woodward, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 13, pp. 7925-7946
Open Access | Times Cited: 3
Structural and biophysical dissection of RNA conformational ensembles
Steve Bonilla, Alisha Jones, Danny Incarnato
Current Opinion in Structural Biology (2024) Vol. 88, pp. 102908-102908
Open Access | Times Cited: 2
A Large-Scale Foundation Model for RNA Function and Structure Prediction
S. Zou, Tianhua Tao, Parvez Mahbub, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
RNAGenesis: Foundation Model for Enhanced RNA Sequence Generation and Structural Insights
Zaixi Zhang, Chao Liu, Ruofan Jin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Editor’s pick: Atomic AI
Vivien Marx
Nature Biotechnology (2024) Vol. 42, Iss. 9, pp. 1341-1342
Closed Access
Bridging biomolecular modalities for knowledge transfer in bio-language models
Mangal Prakash, Artem Moskalev, Peter A. DiMaggio, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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