Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

AllTheBacteria - all bacterial genomes assembled, available and searchable
Martin Hunt, Leandro Lima, D.P. Anderson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 17

Showing 17 citing articles:

A phylogenetic approach to comparative genomics
Anna E. Dewar, Laurence J. Belcher, Stuart A. West
Nature Reviews Genetics (2025)
Open Access | Times Cited: 1
Targeted genome mining with GATOR-GC maps the evolutionary landscape of biosynthetic diversity
José D. D. Cediel-Becerra, Andrés Cumsille, Sebastian Guerra, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access | Times Cited: 1
Seamless, rapid and accurate analyses of outbreak genomic data using Split K-mer Analysis (SKA)
Romain Derelle, Johanna von Wachsmann, Tommi Mäklin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 7
Logan: Planetary-Scale Genome Assembly Surveys Life’s Diversity
Rayan Chikhi, Brice Raffestin, Anton Korobeynikov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Seamless, rapid, and accurate analyses of outbreak genomic data using splitk-mer analysis
Romain Derelle, Johanna von Wachsmann, Tommi Mäklin, et al.
Genome Research (2024) Vol. 34, Iss. 10, pp. 1661-1673
Open Access | Times Cited: 4
mettannotator: a comprehensive and scalable Nextflow annotation pipeline for prokaryotic assemblies
Tatiana A. Gurbich, Martín Beracochea, Nishadi De Silva, et al.
Bioinformatics (2025)
Open Access
Bakta Web – rapid and standardized genome annotation on scalable infrastructures
Sebastian Beyvers, Lukas Jelonek, Alexander Goesmann, et al.
Nucleic Acids Research (2025)
Open Access
Integrated population clustering and genomic epidemiology with PopPIPE
M. McHugh, Samuel Horsfield, Johanna von Wachsmann, et al.
Microbial Genomics (2025) Vol. 11, Iss. 4
Open Access
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Wei Shen, Zamin Iqbal
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining
Sun Boying, Liubov Pashkova, Pascal A. Pieters, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D806-D818
Open Access | Times Cited: 2
In vivo selection of carbapenem resistance during persistent Klebsiella pneumoniae sequence type 395 bloodstream infection due to OmpK36 deletion
Jacob Strahilevitz, Yair Motro, Violeta Temper, et al.
Antimicrobial Agents and Chemotherapy (2024) Vol. 68, Iss. 8
Closed Access | Times Cited: 1
gplasCC: classification and reconstruction of plasmids from short-read sequencing data for any bacterial species
Julián Paganini, Jesse Kerkvliet, Gijs Teunis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Constrained enumeration ofk-mers from a collection of references with metadata
Florian Ingels, Igor Martayan, Mikaël Salson, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
ParallelEvolCCM: Quantifying co-evolutionary patterns among genomic features
Robert G. Beiko, Chaoyue Liu, João Vitor Cavalcante, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
PanKB: An interactive microbial pangenome knowledgebase for research, biotechnological innovation, and knowledge mining
Sun Boying, Лариса Пашкова, PA Pieters, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Phage-plasmid borne methionine tRNA ligase mediates epidemiologically relevant antimicrobial persistence
Y. Tam, P. Malaka De Silva, Clare R. Barker, et al.
medRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Integrated population clustering and genomic epidemiology with PopPIPE
M. McHugh, Samuel Horsfield, Johanna von Wachsmann, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Tiled Amplicon Sequencing Enables Culture-free Whole-Genome Sequencing of Pathogenic Bacteria From Clinical Specimens
Chaney C. Kalinich, Freddy L. Gonzalez, Alice Osmaston, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
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