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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

The Juicebox Assembly Tools module facilitatesde novoassembly of mammalian genomes with chromosome-length scaffolds for under $1000
Olga Dudchenko, Muhammad S. Shamim, Sanjit Singh Batra, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 266

Showing 1-25 of 266 citing articles:

RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 597
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
David J. Bertioli, Jerry Jenkins, Josh Clevenger, et al.
Nature Genetics (2019) Vol. 51, Iss. 5, pp. 877-884
Open Access | Times Cited: 577
Improved reference genome of Aedes aegypti informs arbovirus vector control
Benjamin J. Matthews, Olga Dudchenko, Sarah B. Kingan, et al.
Nature (2018) Vol. 563, Iss. 7732, pp. 501-507
Open Access | Times Cited: 528
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
Michael Alonge, Ludivine Lebeigle, Melanie Kirsche, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 461
Ancient gene linkages support ctenophores as sister to other animals
Darrin T. Schultz, Steven H. D. Haddock, Jessen V. Bredeson, et al.
Nature (2023) Vol. 618, Iss. 7963, pp. 110-117
Open Access | Times Cited: 223
3D genomics across the tree of life reveals condensin II as a determinant of architecture type
Claire Hoencamp, Olga Dudchenko, Ahmed M.O. Elbatsh, et al.
Science (2021) Vol. 372, Iss. 6545, pp. 984-989
Open Access | Times Cited: 214
A beginner's guide to low‐coverage whole genome sequencing for population genomics
Runyang Nicolas Lou, Arne Jacobs, Aryn P. Wilder, et al.
Molecular Ecology (2021) Vol. 30, Iss. 23, pp. 5966-5993
Open Access | Times Cited: 208
African lungfish genome sheds light on the vertebrate water-to-land transition
Kun Wang, Jun Wang, Chenglong Zhu, et al.
Cell (2021) Vol. 184, Iss. 5, pp. 1362-1376.e18
Open Access | Times Cited: 152
Deeply conserved synteny and the evolution of metazoan chromosomes
Oleg Simakov, Jessen V. Bredeson, Kodiak C. Berkoff, et al.
Science Advances (2022) Vol. 8, Iss. 5
Open Access | Times Cited: 138
A novel canine reference genome resolves genomic architecture and uncovers transcript complexity
Chao Wang, Ola Wallerman, Maja L. Arendt, et al.
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 107
The contribution of historical processes to contemporary extinction risk in placental mammals
Aryn P. Wilder, Megan A. Supple, Ayshwarya Subramanian, et al.
Science (2023) Vol. 380, Iss. 6643
Open Access | Times Cited: 57
Toward an Integrated Machine Learning Model of a Proteomics Experiment
Benjamin A. Neely, Viktoria Dorfer, Lennart Martens, et al.
Journal of Proteome Research (2023) Vol. 22, Iss. 3, pp. 681-696
Open Access | Times Cited: 48
Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment
Xiao Ma, Steffen Vanneste, Jiyang Chang, et al.
Nature Plants (2024) Vol. 10, Iss. 2, pp. 240-255
Open Access | Times Cited: 21
Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs
Jessen V. Bredeson, Austin B. Mudd, Sofía Medina-Ruiz, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 18
Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis
Gaorui Gong, Dan Cheng, Shijun Xiao, et al.
GigaScience (2018) Vol. 7, Iss. 11
Open Access | Times Cited: 146
New Approaches for Genome Assembly and Scaffolding
Edward S. Rice, Richard E. Green
Annual Review of Animal Biosciences (2018) Vol. 7, Iss. 1, pp. 17-40
Closed Access | Times Cited: 102
Automated assembly scaffolding elevates a new tomato system for high-throughput genome editing
Michael Alonge, Ludivine Lebeigle, Melanie Kirsche, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 97
A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
Ze Peng, Jessen V. Bredeson, Guohong Albert Wu, et al.
The Plant Journal (2020) Vol. 104, Iss. 5, pp. 1215-1232
Open Access | Times Cited: 83
Molluscan genomics: the road so far and the way forward
André Gomes‐dos‐Santos, Manuel Lopes‐Lima, L. Filipe C. Castro, et al.
Hydrobiologia (2019) Vol. 847, Iss. 7, pp. 1705-1726
Closed Access | Times Cited: 81
Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome
Liuyu Qin, Yiheng Hu, Jinpeng Wang, et al.
Nature Plants (2021) Vol. 7, Iss. 9, pp. 1239-1253
Open Access | Times Cited: 78
Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae
Kumar Saurabh Singh, Erick M. G. Cordeiro, Bartlomiej J. Troczka, et al.
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 76
Whole-genome analysis of giraffe supports four distinct species
Raphael T. F. Coimbra, Sven Winter, Vikas Kumar, et al.
Current Biology (2021) Vol. 31, Iss. 13, pp. 2929-2938.e5
Open Access | Times Cited: 75
The gene-rich genome of the scallop Pecten maximus
Nathan J. Kenny, Shane McCarthy, Olga Dudchenko, et al.
GigaScience (2020) Vol. 9, Iss. 5
Open Access | Times Cited: 73
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Jessen V. Bredeson, Jessica B. Lyons, Ibukun O. Oniyinde, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 64
SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding
Sofia A. Quinodoz, Prashant Bhat, Peter Chovanec, et al.
Nature Protocols (2022) Vol. 17, Iss. 1, pp. 36-75
Closed Access | Times Cited: 43
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