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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Systematic comparative analysis of single cell RNA-sequencing methods
Jiarui Ding, Xian Adiconis, Sean Simmons, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 113

Showing 1-25 of 113 citing articles:

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes
Nicholas M. Tran, Karthik Shekhar, Irene E. Whitney, et al.
Neuron (2019) Vol. 104, Iss. 6, pp. 1039-1055.e12
Open Access | Times Cited: 532
A comparison of automatic cell identification methods for single-cell RNA sequencing data
Tamim Abdelaal, Lieke Michielsen, Davy Cats, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 497
The Spatial and Cell-Type Distribution of SARS-CoV-2 Receptor ACE2 in the Human and Mouse Brains
Rongrong Chen, Keer Wang, Jie Yu, et al.
Frontiers in Neurology (2021) Vol. 11
Open Access | Times Cited: 480
Assessment of computational methods for the analysis of single-cell ATAC-seq data
Huidong Chen, Caleb A. Lareau, Tommaso Andreani, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 303
Single-Cell Transcriptome Analysis in Plants: Advances and Challenges
Rahul Shaw, Xin Tian, Jian Xu
Molecular Plant (2020) Vol. 14, Iss. 1, pp. 115-126
Open Access | Times Cited: 201
Microglia and Astrocytes in Disease: Dynamic Duo or Partners in Crime?
Shane A. Liddelow, Samuel E. Marsh, Beth Stevens
Trends in Immunology (2020) Vol. 41, Iss. 9, pp. 820-835
Closed Access | Times Cited: 185
Efficient and precise single-cell reference atlas mapping with Symphony
Joyce B. Kang, Aparna Nathan, Kathryn Weinand, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 166
Single-cell analyses of aging, inflammation and senescence
Bora Uyar, Daniel H. Palmer, Axel Kowald, et al.
Ageing Research Reviews (2020) Vol. 64, pp. 101156-101156
Open Access | Times Cited: 142
The spatial and cell-type distribution of SARS-CoV-2 receptor ACE2 in human and mouse brain
Rongrong Chen, Keer Wang, Jie Yu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 141
Deciphering Metabolic Heterogeneity by Single-Cell Analysis
Tom M. J. Evers, Mazène Hochane, Sander J. Tans, et al.
Analytical Chemistry (2019) Vol. 91, Iss. 21, pp. 13314-13323
Open Access | Times Cited: 117
Modular and efficient pre-processing of single-cell RNA-seq
Páll Melsted, A. Sina Booeshaghi, Fan Gao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 103
clustifyr: an R package for automated single-cell RNA sequencing cluster classification
Rui Fu, Austin E. Gillen, Ryan M. Sheridan, et al.
F1000Research (2020) Vol. 9, pp. 223-223
Open Access | Times Cited: 102
Computational Methods for Single-Cell RNA Sequencing
Brian Hie, Joshua M. Peters, Sarah K. Nyquist, et al.
Annual Review of Biomedical Data Science (2020) Vol. 3, Iss. 1, pp. 339-364
Open Access | Times Cited: 92
XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment
Youjin Lee, Derek Bogdanoff, Yutong Wang, et al.
Science Advances (2021) Vol. 7, Iss. 17
Open Access | Times Cited: 92
A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq
Angela C. Boroughs, Rebecca C. Larson, Nemanja D. Marjanovic, et al.
Molecular Therapy (2020) Vol. 28, Iss. 12, pp. 2577-2592
Open Access | Times Cited: 80
Interpretable and context-free deconvolution of multi-scale whole transcriptomic data with UniCell deconvolve
Daniel Charytonowicz, Rachel Brody, Robert Sebra
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 25
A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling
Chuanyu Liu, Tao Wu, Fan Fei, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Closed Access | Times Cited: 68
clustifyr: an R package for automated single-cell RNA sequencing cluster classification
Rui Fu, Austin E. Gillen, Ryan M. Sheridan, et al.
F1000Research (2020) Vol. 9, pp. 223-223
Open Access | Times Cited: 66
An interpretable deep-learning architecture of capsule networks for identifying cell-type gene expression programs from single-cell RNA-sequencing data
Lifei Wang, Rui Nie, Zeyang Yu, et al.
Nature Machine Intelligence (2020) Vol. 2, Iss. 11, pp. 693-703
Open Access | Times Cited: 51
Mobile genomics: tools and techniques for tackling transposons
Kathryn O’Neill, David Brocks, Molly Hammell
Philosophical Transactions of the Royal Society B Biological Sciences (2020) Vol. 375, Iss. 1795, pp. 20190345-20190345
Open Access | Times Cited: 49
CSS: cluster similarity spectrum integration of single-cell genomics data
Zhisong He, Agnieska Brazovskaja, Sebastian Ebert, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 48
Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment
Yuheng Du, Qianhui Huang, Cédric Arisdakessian, et al.
G3 Genes Genomes Genetics (2020) Vol. 10, Iss. 5, pp. 1775-1783
Open Access | Times Cited: 46
Defining the Teratoma as a Model for Multi-lineage Human Development
Daniella McDonald, Yan Wu, Amir Dailamy, et al.
Cell (2020) Vol. 183, Iss. 5, pp. 1402-1419.e18
Open Access | Times Cited: 42
FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells
Noudjoud Attaf, Iñaki Cervera-Marzal, Chuang Dong, et al.
Frontiers in Immunology (2020) Vol. 11
Open Access | Times Cited: 40
Chromatin potential identified by shared single cell profiling of RNA and chromatin
Sai Ma, Bing Zhang, Lindsay M. LaFave, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 39
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