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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Modular and efficient pre-processing of single-cell RNA-seq
Páll Melsted, A. Sina Booeshaghi, Fan Gao, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 103

Showing 1-25 of 103 citing articles:

Generalizing RNA velocity to transient cell states through dynamical modeling
Volker Bergen, Marius Lange, Stefan Peidli, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 12, pp. 1408-1414
Open Access | Times Cited: 2170
Orchestrating single-cell analysis with Bioconductor
Robert A. Amezquita, Aaron T. L. Lun, Étienne Becht, et al.
Nature Methods (2019) Vol. 17, Iss. 2, pp. 137-145
Open Access | Times Cited: 737
Democratising deep learning for microscopy with ZeroCostDL4Mic
Lucas von Chamier, Romain F. Laine, Johanna Jukkala, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 444
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Peter A. Szabo, Pranay Dogra, Joshua I. Gray, et al.
Immunity (2021) Vol. 54, Iss. 4, pp. 797-814.e6
Open Access | Times Cited: 332
Does the human placenta express the canonical cell entry mediators for SARS-CoV-2?
Roger Piqué-Regi, Roberto Romero, Adi L. Tarca, et al.
eLife (2020) Vol. 9
Open Access | Times Cited: 263
Dermal Adipocyte Lipolysis and Myofibroblast Conversion Are Required for Efficient Skin Repair
Brett A. Shook, Renee R. Wasko, Omer Mano, et al.
Cell stem cell (2020) Vol. 26, Iss. 6, pp. 880-895.e6
Open Access | Times Cited: 217
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq
Bo Li, Joshua Gould, Yiming Yang, et al.
Nature Methods (2020) Vol. 17, Iss. 8, pp. 793-798
Open Access | Times Cited: 201
Single-Cell Transcriptome Analysis in Plants: Advances and Challenges
Rahul Shaw, Xin Tian, Jian Xu
Molecular Plant (2020) Vol. 14, Iss. 1, pp. 115-126
Open Access | Times Cited: 199
Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning
Nicholas Bernstein, Nicole L. Fong, Irene Lam, et al.
Cell Systems (2020) Vol. 11, Iss. 1, pp. 95-101.e5
Open Access | Times Cited: 173
Generalizing RNA velocity to transient cell states through dynamical modeling
Volker Bergen, Marius Lange, Stefan Peidli, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Closed Access | Times Cited: 163
Reconstructing aspects of human embryogenesis with pluripotent stem cells
Berna Sözen, Victoria Jorgensen, Bailey A. T. Weatherbee, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 146
Deciphering maternal-fetal cross-talk in the human placenta during parturition using single-cell RNA sequencing
Valeria Garcia‐Flores, Roberto Romero, Adi L. Tarca, et al.
Science Translational Medicine (2024) Vol. 16, Iss. 729
Open Access | Times Cited: 22
The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development
Dong Won Kim, Parris Whitney Washington, Zoe Qianyi Wang, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 131
Single Cell RNA Sequencing in Atherosclerosis Research
Jesse W. Williams, Holger Winkels, Christopher P. Durant, et al.
Circulation Research (2020) Vol. 126, Iss. 9, pp. 1112-1126
Open Access | Times Cited: 113
Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins
Jase Gehring, Jong Hwee Park, Sisi Chen, et al.
Nature Biotechnology (2019) Vol. 38, Iss. 1, pp. 35-38
Open Access | Times Cited: 104
Tools for the analysis of high-dimensional single-cell RNA sequencing data
Yan Wu, Kun Zhang
Nature Reviews Nephrology (2020) Vol. 16, Iss. 7, pp. 408-421
Closed Access | Times Cited: 98
Computational Methods for Single-Cell RNA Sequencing
Brian Hie, Joshua M. Peters, Sarah K. Nyquist, et al.
Annual Review of Biomedical Data Science (2020) Vol. 3, Iss. 1, pp. 339-364
Open Access | Times Cited: 90
Cancer Induces a Stress Ileopathy Depending on β-Adrenergic Receptors and Promoting Dysbiosis that Contributes to Carcinogenesis
Satoru Yonekura, Safae Terrisse, Carolina Alves Costa Silva, et al.
Cancer Discovery (2021) Vol. 12, Iss. 4, pp. 1128-1151
Open Access | Times Cited: 75
Isoform cell-type specificity in the mouse primary motor cortex
A. Sina Booeshaghi, Zizhen Yao, Cindy T. J. van Velthoven, et al.
Nature (2021) Vol. 598, Iss. 7879, pp. 195-199
Open Access | Times Cited: 74
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
Charlotte Soneson, Avi Srivastava, Rob Patro, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 1, pp. e1008585-e1008585
Open Access | Times Cited: 58
Diverse partial reprogramming strategies restore youthful gene expression and transiently suppress cell identity
Antoine E. Roux, Chunlian Zhang, Jonathan S. Paw, et al.
Cell Systems (2022) Vol. 13, Iss. 7, pp. 574-587.e11
Open Access | Times Cited: 48
Time-resolved single-cell RNA-seq using metabolic RNA labelling
Florian Erhard, Antoine‐Emmanuel Saliba, Alexandra Lusser, et al.
Nature Reviews Methods Primers (2022) Vol. 2, Iss. 1
Closed Access | Times Cited: 46
Amyloid-beta and tau pathologies act synergistically to induce novel disease stage-specific microglia subtypes
Dong Won Kim, Kevin J. Tu, Alice Wei, et al.
Molecular Neurodegeneration (2022) Vol. 17, Iss. 1
Open Access | Times Cited: 40
Lineage Reversion Drives WNT Independence in Intestinal Cancer
Teng Han, Sukanya Goswami, Yang Hu, et al.
Cancer Discovery (2020) Vol. 10, Iss. 10, pp. 1590-1609
Open Access | Times Cited: 65
Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing
Joshua S. Bloom, Laila Sathe, Chetan Munugala, et al.
medRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 59
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