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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
Sushmita Roy, Ilan Wapinski, Jenna Pfiffner, et al.
Genome Research (2013) Vol. 23, Iss. 6, pp. 1039-1050
Open Access | Times Cited: 55

Showing 1-25 of 55 citing articles:

Comparative Analysis of Gene Regulatory Networks: From Network Reconstruction to Evolution
Dawn Thompson, Aviv Regev, Sushmita Roy
Annual Review of Cell and Developmental Biology (2015) Vol. 31, Iss. 1, pp. 399-428
Open Access | Times Cited: 175
Integrative Multi-omics Module Network Inference with Lemon-Tree
Eric Bonnet, Laurence Calzone, Tom Michoel
PLoS Computational Biology (2015) Vol. 11, Iss. 2, pp. e1003983-e1003983
Open Access | Times Cited: 99
Evolutionary principles of modular gene regulation in yeasts
Dawn Thompson, Sushmita Roy, Michelle M. Chan, et al.
eLife (2013) Vol. 2
Open Access | Times Cited: 83
Primate iPS cells as tools for evolutionary analyses
Stephanie Wunderlich, Martin Kircher, Beate Vieth, et al.
Stem Cell Research (2014) Vol. 12, Iss. 3, pp. 622-629
Open Access | Times Cited: 69
A prior-based integrative framework for functional transcriptional regulatory network inference
Alireza Fotuhi Siahpirani, Sushmita Roy
Nucleic Acids Research (2016), pp. gkw963-gkw963
Open Access | Times Cited: 68
Single cell gene regulatory networks in plants: Opportunities for enhancing climate change stress resilience
Rajiv Kumar Tripathi, Olivia Wilkins
Plant Cell & Environment (2021) Vol. 44, Iss. 7, pp. 2006-2017
Open Access | Times Cited: 52
Comparative Analyses of Gene Co-expression Networks: Implementations and Applications in the Study of Evolution
Katie Ovens, B. Frank Eames, Ian McQuillan
Frontiers in Genetics (2021) Vol. 12
Open Access | Times Cited: 45
Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting
Alexandra Grote, Yichao Li, Canhui Liu, et al.
PLoS neglected tropical diseases (2020) Vol. 14, Iss. 6, pp. e0008275-e0008275
Open Access | Times Cited: 49
Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies
Christopher Koch, Jay H. Konieczka, Toni Delorey, et al.
Cell Systems (2017) Vol. 4, Iss. 5, pp. 543-558.e8
Open Access | Times Cited: 48
The ancestral levels of transcription and the evolution of sexual phenotypes in filamentous fungi
Frances Trail, Zheng Wang, Kayla Stefanko, et al.
PLoS Genetics (2017) Vol. 13, Iss. 7, pp. e1006867-e1006867
Open Access | Times Cited: 44
Fused Regression for Multi-source Gene Regulatory Network Inference
Kari Y. Lam, Zachary M. Westrick, Christian L. Müller, et al.
PLoS Computational Biology (2016) Vol. 12, Iss. 12, pp. e1005157-e1005157
Open Access | Times Cited: 42
Accounting for cis-regulatory constraint prioritizes genes likely to affect species-specific traits
Alexander L. Starr, David Gokhman, Hunter B. Fraser
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 13
Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution
Meihua Christina Kuang, Jacek Kominek, William G. Alexander, et al.
Molecular Biology and Evolution (2018) Vol. 35, Iss. 8, pp. 1968-1981
Open Access | Times Cited: 36
A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions
Alireza Fotuhi Siahpirani, Ferhat Ay, Sushmita Roy
Genome biology (2016) Vol. 17, Iss. 1
Open Access | Times Cited: 32
Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patterns
Nisha Iyer, Junha Shin, Stephanie Cuskey, et al.
Science Advances (2022) Vol. 8, Iss. 39
Open Access | Times Cited: 15
Zinc Cluster Transcription Factors Alter Virulence in Candida albicans
Luca Issi, Rhys A. Farrer, Kelly Pastor, et al.
Genetics (2016) Vol. 205, Iss. 2, pp. 559-576
Open Access | Times Cited: 25
Evolution of regulatory networks associated with traits under selection in cichlids
Tarang K. Mehta, Christopher Koch, Will Nash, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 20
Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development
Zheng Wang, Aditya Gudibanda, Ugochukwu Ugwuowo, et al.
Fungal Biology Reviews (2018) Vol. 32, Iss. 4, pp. 249-264
Open Access | Times Cited: 23
Evolution of intraspecific transcriptomic landscapes in yeasts
Christian Brion, David Pflieger, Anne Friedrich, et al.
Nucleic Acids Research (2015) Vol. 43, Iss. 9, pp. 4558-4568
Open Access | Times Cited: 20
Natural gene expression variation studies in yeast
Dawn Thompson, Francisco A. Cubillos
Yeast (2016) Vol. 34, Iss. 1, pp. 3-17
Closed Access | Times Cited: 18
Model-based clustering of multi-tissue gene expression data
Pau Erola, Johan Björkegren, Tom Michoel
Bioinformatics (2019) Vol. 36, Iss. 6, pp. 1807-1813
Open Access | Times Cited: 18
Learning deep representation and discriminative features for clustering of multi-layer networks
Wenming Wu, Xiaoke Ma, Quan Wang, et al.
Neural Networks (2023) Vol. 170, pp. 405-416
Closed Access | Times Cited: 6
Multi-Species Network Inference Improves Gene Regulatory Network Reconstruction for Early Embryonic Development inDrosophila
Anagha Joshi, Yvonne Beck, Tom Michoel
Journal of Computational Biology (2015) Vol. 22, Iss. 4, pp. 253-265
Open Access | Times Cited: 16
Ancestral reconstruction of protein interaction networks
Benjamin J. Liebeskind, Richard W. Aldrich, Edward M. Marcotte
PLoS Computational Biology (2019) Vol. 15, Iss. 10, pp. e1007396-e1007396
Open Access | Times Cited: 16
Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development
Deborah Chasman, Nisha Iyer, Alireza Fotuhi Siahpirani, et al.
Cell Systems (2019) Vol. 9, Iss. 2, pp. 167-186.e12
Open Access | Times Cited: 15
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