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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Time course regulatory analysis based on paired expression and chromatin accessibility data
Zhana Duren, Xi Chen, Jingxue Xin, et al.
Genome Research (2020) Vol. 30, Iss. 4, pp. 622-634
Open Access | Times Cited: 43

Showing 1-25 of 43 citing articles:

Gene regulatory network inference in the era of single-cell multi-omics
Pau Badia-i-Mompel, Lorna Wessels, Sophia Müller‐Dott, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 11, pp. 739-754
Closed Access | Times Cited: 188
Temporal modelling using single-cell transcriptomics
Jun Ding, Nadav Sharon, Ziv Bar‐Joseph
Nature Reviews Genetics (2022) Vol. 23, Iss. 6, pp. 355-368
Open Access | Times Cited: 121
Prenatal immune stress blunts microglia reactivity, impairing neurocircuitry
Lindsay N. Hayes, Kyongman An, Elisa Carloni, et al.
Nature (2022) Vol. 610, Iss. 7931, pp. 327-334
Closed Access | Times Cited: 82
Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data
Qiuyue Yuan, Zhana Duren
Nature Biotechnology (2024)
Open Access | Times Cited: 28
Advances in bulk and single-cell multi-omics approaches for systems biology and precision medicine
Yunjin Li, Lu Ma, Duojiao Wu, et al.
Briefings in Bioinformatics (2021)
Closed Access | Times Cited: 67
MIRA: joint regulatory modeling of multimodal expression and chromatin accessibility in single cells
Allen W. Lynch, Christina V. Theodoris, Henry W. Long, et al.
Nature Methods (2022) Vol. 19, Iss. 9, pp. 1097-1108
Open Access | Times Cited: 49
Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data
Daniel Kim, Andy Tran, Hani Jieun Kim, et al.
npj Systems Biology and Applications (2023) Vol. 9, Iss. 1
Open Access | Times Cited: 37
Experimental evidence for cancer resistance in a bat species
Rong Hua, Yuan-Shuo Ma, Lu Yang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 14
GeneCompass: deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model
Xiaodong Yang, Guole Liu, Guihai Feng, et al.
Cell Research (2024)
Open Access | Times Cited: 12
Dynamic chromatin regulatory landscape of human CAR T cell exhaustion
David Gennert, Rachel C. Lynn, Jeff M. Granja, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 30
Open Access | Times Cited: 50
Regulatory analysis of single cell multiome gene expression and chromatin accessibility data with scREG
Zhana Duren, Fengge Chang, Fnu Naqing, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 30
Single Cell Multiomics Identifies Cells and Genetic Networks Underlying Alveolar Capillary Dysplasia
Minzhe Guo, Kathryn A. Wikenheiser‐Brokamp, Joseph A. Kitzmiller, et al.
American Journal of Respiratory and Critical Care Medicine (2023) Vol. 208, Iss. 6, pp. 709-725
Open Access | Times Cited: 14
Enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data
Yang Li, Anjun Ma, Yizhong Wang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 5
Sc-compReg enables the comparison of gene regulatory networks between conditions using single-cell data
Zhana Duren, Wenhui Sophia Lu, Joseph G. Arthur, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 28
Elucidation of Biological Networks across Complex Diseases Using Single-Cell Omics
Yang Li, Anjun Ma, Ewy A. Mathé, et al.
Trends in Genetics (2020) Vol. 36, Iss. 12, pp. 951-966
Open Access | Times Cited: 29
Identification of putative enhancer-like elements predicts regulatory networks active in planarian adult stem cells
Jakke Neiro, Divya Sridhar, Anish Dattani, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 18
Mapping the developmental trajectory of human astrocytes reveals divergence in glioblastoma
Caitlin Sojka, Hsiao‐Lin V. Wang, Tarun N. Bhatia, et al.
Nature Cell Biology (2025)
Closed Access
Evolutionary repeatability of chromatin accessibility in the hippocampus between echolocating bats and soft-furred tree mice
Luye Shi, Yuanshuo Ma, Qinyang Hua, et al.
Science China Life Sciences (2025)
Closed Access
cisDynet: An integrated platform for modeling gene‐regulatory dynamics and networks
Tao Zhu, Xinkai Zhou, Y. Nancy You, et al.
iMeta (2023) Vol. 2, Iss. 4
Open Access | Times Cited: 9
SPI1-KLF1/LYL1 axis regulates lineage commitment during endothelial-to-hematopoietic transition from human pluripotent stem cells
Kengyuan Qu, Shaokang Mo, Junfeng Huang, et al.
iScience (2024) Vol. 27, Iss. 8, pp. 110409-110409
Open Access | Times Cited: 3
A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data
Jens Uwe Loers, Vanessa Vermeirssen
Briefings in Bioinformatics (2024) Vol. 25, Iss. 5
Open Access | Times Cited: 3
Human Genetic Variants Associated with COVID-19 Severity are Enriched in Immune and Epithelium Regulatory Networks
Zhanying Feng, Xianwen Ren, Zhana Duren, et al.
Phenomics (2022) Vol. 2, Iss. 6, pp. 389-403
Open Access | Times Cited: 13
Uncovering the Gene Regulatory Networks Underlying Macrophage Polarization Through Comparative Analysis of Bulk and Single-Cell Data
Klébea Carvalho, Elisabeth Rebboah, Camden Jansen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 15
hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental context
Zhanying Feng, Zhana Duren, Ziyi Xiong, et al.
Communications Biology (2021) Vol. 4, Iss. 1
Open Access | Times Cited: 15
SeATAC: a tool for exploring the chromatin landscape and the role of pioneer factors
Wuming Gong, Nikita Dsouza, Daniel J. Garry
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 5
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