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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq
Robert A. Policastro, R. Taylor Raborn, Volker Brendel, et al.
Genome Research (2020) Vol. 30, Iss. 6, pp. 910-923
Open Access | Times Cited: 30

Showing 1-25 of 30 citing articles:

Evolution of binding preferences among whole-genome duplicated transcription factors
Tamar Gera, Felix Jonas, Roye More, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 58
A comparison of experimental assays and analytical methods for genome-wide identification of active enhancers
Yao Li, Jin Liang, Abdullah Ozer, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 7, pp. 1056-1065
Open Access | Times Cited: 55
Complementary strategies for directing in vivo transcription factor binding through DNA binding domains and intrinsically disordered regions
Divya Krishna Kumar, Felix Jonas, Tamar Jana, et al.
Molecular Cell (2023) Vol. 83, Iss. 9, pp. 1462-1473.e5
Open Access | Times Cited: 39
The molecular grammar of protein disorder guiding genome-binding locations
Felix Jonas, Miri Carmi, Beniamin Krupkin, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 10, pp. 4831-4844
Open Access | Times Cited: 22
Plasticity and heterogeneity of thermogenic adipose tissue
Wenfei Sun, Salvatore Modica, Hua Dong, et al.
Nature Metabolism (2021) Vol. 3, Iss. 6, pp. 751-761
Closed Access | Times Cited: 37
Multimodal HLA-I genotype regulation by human cytomegalovirus US10 and resulting surface patterning
Carolin Gerke, Liane Bauersfeld, Ivo Schirmeister, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 4
Robust detection of pathogenicHYDINvariants that cause primary ciliary dyskinesia using RNA-seq of nasal mucosa
Minako Hijikata, Kozo Morimoto, Masashi Ito, et al.
Journal of Medical Genetics (2025), pp. jmg-110400
Closed Access
TIRE-seq simplifies transcriptomics via integrated RNA capture and library preparation
Patrick O’Keeffe, Yasmin Nouri, Hui Shi Saw, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
The origin and evolution of a distinct mechanism of transcription initiation in yeasts
Zhaolian Lu, Zhenguo Lin
Genome Research (2020) Vol. 31, Iss. 1, pp. 51-63
Open Access | Times Cited: 32
Recycling of parental histones preserves the epigenetic landscape during embryonic development
Dominik Mühlen, Xiaojuan Li, Oleksandr Dovgusha, et al.
Science Advances (2023) Vol. 9, Iss. 5
Open Access | Times Cited: 9
Global approaches for profiling transcription initiation
Robert A. Policastro, Gabriel E. Zentner
Cell Reports Methods (2021) Vol. 1, Iss. 5, pp. 100081-100081
Open Access | Times Cited: 19
Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels
Yunye Zhu, Irina O. Vvedenskaya, Sing‐Hoi Sze, et al.
Nature Structural & Molecular Biology (2024) Vol. 31, Iss. 1, pp. 190-202
Open Access | Times Cited: 2
The regulatory grammar of human promoters uncovered by MPRA-trained deep learning
Lucía Barbadilla-Martínez, Noud H.M. Klaassen, Vinícius H. Franceschini-Santos, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 2
TSSr: an R package for comprehensive analyses of TSS sequencing data
Zhaolian Lu, Keenan Berry, Zhenbin Hu, et al.
NAR Genomics and Bioinformatics (2021) Vol. 3, Iss. 4
Open Access | Times Cited: 14
Multi-omics reveals principles of gene regulation and pervasive non-productive transcription in the human cytomegalovirus genome
Christopher Jürges, Manivel Lodha, Vu Thuy Khanh Le‐Trilling, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 9
Flexible analysis of TSS mapping data and detection of TSS shifts with TSRexploreR
Robert A. Policastro, Daniel J. McDonald, Volker Brendel, et al.
NAR Genomics and Bioinformatics (2021) Vol. 3, Iss. 2
Open Access | Times Cited: 12
A data‐driven genome annotation approach for cassava
Chenna Swetha, Maxim Ivanov, Tue Kjærgaard Nielsen, et al.
The Plant Journal (2024) Vol. 119, Iss. 3, pp. 1596-1612
Open Access | Times Cited: 1
Alternative Transcription Start Site Usage and Functional Implications in Pathogenic Fungi
Thi Tuong Vi Dang, Jessie Colin, Guilhem Janbon
Journal of Fungi (2022) Vol. 8, Iss. 10, pp. 1044-1044
Open Access | Times Cited: 5
SMAD4–201 transcript as a putative biomarker in colorectal cancer
Tamara Babič, Sandra Dragičević, Marko Miladinov, et al.
BMC Cancer (2022) Vol. 22, Iss. 1
Open Access | Times Cited: 4
Widespread transcription initiation within coding sequences marks tissue identity and accessible chromatin
Xutong Wang, Jingbo Duan, Chancelor B. Clark, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Alternative transcriptomes and plant resilience: technological innovations and biological insights
Ashish Pathak, Raja Jeet, Mathilde Moens, et al.
Journal of Plant Biochemistry and Biotechnology (2024)
Closed Access
Noncanonical transcription initiation is primarily tissue specific and epigenetically tuned in paleopolyploid plants
Xutong Wang, Jingbo Duan, Chancelor B. Clark, et al.
The Plant Cell (2024)
Closed Access
Multimodal HLA-I genotype regulation by human cytomegalovirus US10 and resulting surface patterning
Carolin Gerke, Liane Bauersfeld, Valerie Oberhardt, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Smar2C2: A Simple and Efficient Protocol for the Identification of Transcription Start Sites
Andrew W. Murray, Christopher Vollmers, Robert J. Schmitz
Current Protocols (2023) Vol. 3, Iss. 3
Open Access | Times Cited: 1
An improved method for the highly specific detection of transcription start sites
Masahide Seki, Yuta Kuze, Xiang Zhang, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. 2, pp. e7-e7
Open Access | Times Cited: 1
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