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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
Lars Gabriel, Tomáš Brůna, Katharina J. Hoff, et al.
Genome Research (2024) Vol. 34, Iss. 5, pp. 769-777
Open Access | Times Cited: 112

Showing 1-25 of 112 citing articles:

GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes
Tomáš Brůna, Alexandre Lomsadze, Mark Borodovsky
Genome Research (2024) Vol. 34, Iss. 5, pp. 757-768
Open Access | Times Cited: 24
Genome assembly variation and its implications for gene discovery in nematodes
Grace M. Mariene, James D. Wasmuth
International Journal for Parasitology (2025)
Open Access | Times Cited: 2
A pangenome reveals LTR repeat dynamics as a major driver of genome evolution in Chenopodium
Kate E. Jaggi, Karol Krak, Helena Štorchová, et al.
The Plant Genome (2025) Vol. 18, Iss. 1
Open Access | Times Cited: 2
A new gene finding tool GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes
Tomáš Brůna, Alexandre Lomsadze, Mark Borodovsky
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 32
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Ann M. Mc Cartney, Giulio Formenti, Alice Mouton, et al.
npj Biodiversity (2024) Vol. 3, Iss. 1
Open Access | Times Cited: 12
Haplotype-resolved genome assembly provides insights into evolutionary history of the Actinidia arguta tetraploid
Feng Zhang, Yingzhen Wang, Yunzhi Lin, et al.
Molecular Horticulture (2024) Vol. 4, Iss. 1
Open Access | Times Cited: 10
Annelid Comparative Genomics and the Evolution of Massive Lineage-specific Genome Rearrangement in Bilaterians
Thomas D. Lewin, Isabel Jiah-Yih Liao, Yi‐Jyun Luo
Molecular Biology and Evolution (2024) Vol. 41, Iss. 9
Open Access | Times Cited: 9
Toward an integrated omics approach for plant biosynthetic pathway discovery in the age of AI
Jakob K. Reinhardt, David Craft, Jing‐Ke Weng
Trends in Biochemical Sciences (2025)
Closed Access | Times Cited: 1
Near chromosome-level and highly repetitive genome assembly of the snake pipefish Entelurus aequoreus (Syngnathiformes: Syngnathidae)
Magnus Wolf, Bruno Lopes da Silva Ferrette, Raphael T. F. Coimbra, et al.
Gigabyte (2024) Vol. 2024, pp. 1-13
Open Access | Times Cited: 7
​​Fusion, fission, and scrambling of the bilaterian genome in Bryozoa
Thomas D. Lewin, Isabel Jiah-Yih Liao, Mu-En Chen, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae
Muhammad Asim Javed, Soham Mukhopadhyay, Éric Normandeau, et al.
Genome Biology and Evolution (2024) Vol. 16, Iss. 6
Open Access | Times Cited: 6
The genome of Eleocharis vivipara elucidates the genetics of C3–C4 photosynthetic plasticity and karyotype evolution in the Cyperaceae
Hongbing Liu, Hang Zhao, Yanwen Zhang, et al.
Journal of Integrative Plant Biology (2024) Vol. 66, Iss. 11, pp. 2505-2527
Open Access | Times Cited: 5
PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects
François Renoz, Nicolas Parisot, Patrice Bâa-Puyoulet, et al.
Scientific Data (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 4
The ivory lncRNA regulates seasonal color patterns in buckeye butterflies
Richard A. Fandino, Noah K. Brady, Martik Chatterjee, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 41
Open Access | Times Cited: 4
The gap-free genome assemblies of two Pyrus bretschneideri cultivars and GWAS analyses identify a CCCH-type zinc finger protein as a key regulator of lignin biosynthesis and stone cell formation in pear fruit
Yunpeng Cao, Xiaofeng Feng, Baopeng Ding, et al.
Plant Communications (2024), pp. 101238-101238
Open Access | Times Cited: 4
Fusion, fission, and scrambling of the bilaterian genome in Bryozoa
Thomas D. Lewin, Isabel Jiah-Yih Liao, Mu-En Chen, et al.
Genome Research (2025) Vol. 35, Iss. 1, pp. 78-92
Open Access
The chromosome-scale genome of Black Wolfberry (Lycium ruthenicum) provides useful genomic resources for identifying genes related to anthocyanin biosynthesis and disease resistance
Gulbar Yisilam, Enting Zheng, C Li, et al.
Plant Diversity (2025) Vol. 47, Iss. 2, pp. 201-213
Open Access
Chromosome-level genome assemblies of sunflower oilseed and confectionery cultivars
Liuxi Yi, Haizhu Bao, Yang Wu, et al.
Scientific Data (2025) Vol. 12, Iss. 1
Open Access
PSAURON: a tool for assessing protein annotation across a broad range of species
Markus J. Sommer, Aleksey V. Zimin, Steven L. Salzberg
NAR Genomics and Bioinformatics (2025) Vol. 7, Iss. 1
Open Access
Chromosome-scale and haplotype-resolved genome assembly of Populus trichocarpa
Wentao Gao, Sui Wang, Tao Jiang, et al.
Horticulture Research (2025) Vol. 12, Iss. 4
Open Access
Near telomere-to-telomere genome assemblies of Silkie Gallus gallus and Mallard Anas platyrhynchos restored the structure of chromosomes and “missing” genes in birds
Qiangsen Zhao, Zhongtao Yin, Zhuocheng Hou
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology (2025) Vol. 16, Iss. 1
Open Access
Genome assembly and population analysis of tetraploid marama bean reveal two distinct genome types
Jin Li, Christopher A. Cullis
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
An updated reference genome of Barbatula barbatula (Linnaeus, 1758)
Levente Laczkó, Nikoletta Andrea Nagy, Ágnes Nagy, et al.
Scientific Data (2025) Vol. 12, Iss. 1
Open Access
A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity
Temitope Opeyemi Oriowo, Ioannis Chrysostomakis, Sebastián Martín, et al.
GigaScience (2025) Vol. 14
Open Access
The role of centromeric transposable elements in shaping chromosome evolution
Christian Parisod, Manuel Poretti, Terezie Mandáková, et al.
Research Square (Research Square) (2025)
Closed Access
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