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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system
Will A. Overholt, Martin Hölzer, Patricia Geesink, et al.
Environmental Microbiology (2020) Vol. 22, Iss. 9, pp. 4000-4013
Open Access | Times Cited: 62

Showing 1-25 of 62 citing articles:

Towards population-scale long-read sequencing
Wouter De Coster, Matthias H. Weissensteiner, Fritz J. Sedlazeck
Nature Reviews Genetics (2021) Vol. 22, Iss. 9, pp. 572-587
Open Access | Times Cited: 257
Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
Samuel Martin, Darren Heavens, Yuxuan Lan, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 145
Diversity in the soil virosphere: to infinity and beyond?
Simon Roux, Joanne Emerson
Trends in Microbiology (2022) Vol. 30, Iss. 11, pp. 1025-1035
Open Access | Times Cited: 71
Disentangling host–microbiota complexity through hologenomics
Antton Alberdi, Sandra B. Andersen, Morten T. Limborg, et al.
Nature Reviews Genetics (2021) Vol. 23, Iss. 5, pp. 281-297
Closed Access | Times Cited: 86
DNA Metabarcoding for the Characterization of Terrestrial Microbiota—Pitfalls and Solutions
Davide Francioli, Guillaume Lentendu, Simon Lewin, et al.
Microorganisms (2021) Vol. 9, Iss. 2, pp. 361-361
Open Access | Times Cited: 69
nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning
Sabrina Krakau, Daniel Straub, Hadrien Gourlé, et al.
NAR Genomics and Bioinformatics (2022) Vol. 4, Iss. 1
Open Access | Times Cited: 48
Closed genomes uncover a saltwater species of Candidatus Electronema and shed new light on the boundary between marine and freshwater cable bacteria
Mantas Sereika, Francesca Petriglieri, Thomas Bygh Nymann Jensen, et al.
The ISME Journal (2023) Vol. 17, Iss. 4, pp. 561-569
Open Access | Times Cited: 25
Charting the complexity of the activated sludge microbiome through a hybrid sequencing strategy
Lei Liu, Yulin Wang, Yang Yu, et al.
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 56
Strategies and tools in illumina and nanopore‐integrated metagenomic analysis of microbiome data
Yu Xia, Xiang Li, Ziqi Wu, et al.
iMeta (2023) Vol. 2, Iss. 1
Open Access | Times Cited: 19
Comparing genomes recovered from time-series metagenomes using long- and short-read sequencing technologies
Luis H. Orellana, Karen Krüger, Chandni Sidhu, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 19
High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method
Lei Liu, Yulin Wang, You Che, et al.
Microbiome (2020) Vol. 8, Iss. 1
Open Access | Times Cited: 41
Oxford Nanopore R10.4 long-read sequencing enables near-perfect bacterial genomes from pure cultures and metagenomes without short-read or reference polishing
Mantas Sereika, Rasmus Hansen Kirkegaard, Søren Michael Karst, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 33
What the Phage: a scalable workflow for the identification and analysis of phage sequences
Mike Marquet, Martin Hölzer, Mathias W. Pletz, et al.
GigaScience (2022) Vol. 11
Open Access | Times Cited: 27
Nanopore and Illumina sequencing reveal different viral populations from human gut samples
Ryan Cook, Andrea Telatin, Shen-Yuan Hsieh, et al.
Microbial Genomics (2024) Vol. 10, Iss. 4
Open Access | Times Cited: 6
Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)
Renaud Van Damme, Martin Hölzer, Adrian Viehweger, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 2, pp. e1008716-e1008716
Open Access | Times Cited: 32
Long road to long-read assembly
Vivien Marx
Nature Methods (2021) Vol. 18, Iss. 2, pp. 125-129
Open Access | Times Cited: 30
RNA Viruses in Aquatic Ecosystems through the Lens of Ecological Genomics and Transcriptomics
Sandra Kolundžija, Dong-Qiang Cheng, Federico M. Lauro
Viruses (2022) Vol. 14, Iss. 4, pp. 702-702
Open Access | Times Cited: 20
Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes
Nastassia Patin, Kelly D. Goodwin
mSystems (2022) Vol. 7, Iss. 6
Open Access | Times Cited: 19
Metagenomics study in aquatic resource management: Recent trends, applied methodologies and future needs
Bijay Kumar Behera, Budheswar Dehury, Ajaya Kumar Rout, et al.
Gene Reports (2021) Vol. 25, pp. 101372-101372
Closed Access | Times Cited: 25
Analysis of microbial diversity and volatile metabolites across different types of pit mud in sauce-flavored Baijiu based on nanopore sequencing and metabolomics
Wenli Wei, Yi Shen, Wei Cheng, et al.
LWT (2023) Vol. 188, pp. 115465-115465
Open Access | Times Cited: 10
Exploring the taxonomical and functional profiles of marine microorganisms in Submarine Groundwater Discharge vent water from Mabini, Batangas, Philippines through metagenome-assembled genomes
Joshua T. Veluz, Laurence Anthony N. Mallari, Paul Christian T. Gloria, et al.
Frontiers in Genetics (2025) Vol. 16
Open Access
Long-read metagenomics gives a more accurate insight into the microbiota of long-ripened gouda cheeses
Hannes Decadt, Cristian Díaz-Muñoz, Louise Vermote, et al.
Frontiers in Microbiology (2025) Vol. 16
Open Access
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
Dmitry Antipov, Mikhail Rayko, Mikhail Kolmogorov, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 16
High niche specificity and host genetic diversity of groundwater viruses
Emilie Gios, Olivia E Mosley, Michael Hoggard, et al.
The ISME Journal (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 3
Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing
Katharina Willenbücher, Daniel Wibberg, Liren Huang, et al.
Microorganisms (2022) Vol. 10, Iss. 2, pp. 368-368
Open Access | Times Cited: 14
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