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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Error, noise and bias in de novo transcriptome assemblies
Adam H. Freedman, Michèle Clamp, Timothy B. Sackton
Molecular Ecology Resources (2020) Vol. 21, Iss. 1, pp. 18-29
Open Access | Times Cited: 65

Showing 1-25 of 65 citing articles:

A simple guide to de novo transcriptome assembly and annotation
Venket Raghavan, Louis Kraft, Fantin Mesny, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 2
Open Access | Times Cited: 95
Integrative mapping of the dog epigenome: Reference annotation for comparative intertissue and cross-species studies
Keun Hong Son, Mark Borris D. Aldonza, A-Reum Nam, et al.
Science Advances (2023) Vol. 9, Iss. 27
Open Access | Times Cited: 18
Molecular Mechanisms Underlying Vibrio Tolerance in Ruditapes philippinarum Revealed by Comparative Transcriptome Profiling
Zhihui Yin, Hongtao Nie, Kunyin Jiang, et al.
Frontiers in Immunology (2022) Vol. 13
Open Access | Times Cited: 24
Simulation Tests of Methods in Evolution, Ecology, and Systematics: Pitfalls, Progress, and Principles
Katie E. Lotterhos, Matthew C. Fitzpatrick, Heath Blackmon
Annual Review of Ecology Evolution and Systematics (2022) Vol. 53, Iss. 1, pp. 113-136
Open Access | Times Cited: 21
Evaluating the Performance of Widely Used Phylogenetic Models for Gene Expression Evolution
Jose Rafael Dimayacyac, Shanyun Wu, Daohan Jiang, et al.
Genome Biology and Evolution (2023) Vol. 15, Iss. 12
Open Access | Times Cited: 11
How error correction affects polymerase chain reaction deduplication: A survey based on unique molecular identifier datasets of short reads
Pengyao Ping, Tian Lan, Shuquan Su, et al.
Quantitative Biology (2025) Vol. 13, Iss. 3
Open Access
Hormonal and neural correlates of care in active versus observing poison frog parents
Eva K. Fischer, Lauren A. O’Connell
Hormones and Behavior (2020) Vol. 120, pp. 104696-104696
Open Access | Times Cited: 31
RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow
Marie Lataretu, Martin Hölzer
Genes (2020) Vol. 11, Iss. 12, pp. 1487-1487
Open Access | Times Cited: 31
Going with the flow: How corals in high‐flow environments can beat the heat
James E. Fifer, Bastian Bentlage, Sarah Lemer, et al.
Molecular Ecology (2021) Vol. 30, Iss. 9, pp. 2009-2024
Closed Access | Times Cited: 26
A pooled‐sample draft genome assembly provides insights into host plant‐specific transcriptional responses of a Solanaceae‐specializing pest, Tupiocoris notatus (Hemiptera: Miridae)
Jay K. Goldberg, Carson W. Allan, Dario Copetti, et al.
Ecology and Evolution (2024) Vol. 14, Iss. 3
Open Access | Times Cited: 2
Trans2express – de novo transcriptome assembly pipeline optimized for gene expression analysis
Aleksandra M. Kasianova, Aleksey A. Penin, Mikhail I. Schelkunov, et al.
Plant Methods (2024) Vol. 20, Iss. 1
Open Access | Times Cited: 2
The Developmental Transcriptome of Bagworm, Metisa plana (Lepidoptera: Psychidae) and Insights into Chitin Biosynthesis Genes
Nur Lina Rahmat, Anis Nadyra Zifruddin, Cik Mohd Rizuan Zainal Abidin, et al.
Genes (2020) Vol. 12, Iss. 1, pp. 7-7
Open Access | Times Cited: 16
Comprehensive at-arrival transcriptomic analysis of post-weaned beef cattle uncovers type I interferon and antiviral mechanisms associated with bovine respiratory disease mortality
Matthew A. Scott, Amelia R. Woolums, Cyprianna E. Swiderski, et al.
PLoS ONE (2021) Vol. 16, Iss. 4, pp. e0250758-e0250758
Open Access | Times Cited: 15
Perspectives on transcriptomics in animal physiology studies
Christopher J. Martyniuk
Comparative Biochemistry and Physiology Part B Biochemistry and Molecular Biology (2020) Vol. 250, pp. 110490-110490
Closed Access | Times Cited: 13
Species and population specific gene expression in blood transcriptomes of marine turtles
Shreya M. Banerjee, Jamie Adkins Stoll, Camryn D. Allen, et al.
BMC Genomics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 12
DEGoldS: A Workflow to Assess the Accuracy of Differential Expression Analysis Pipelines through Gold-standard Construction
Mikel Hurtado, Fernando Mora‐Márquez, Álvaro Soto, et al.
Current Bioinformatics (2023) Vol. 18, Iss. 4, pp. 296-309
Open Access | Times Cited: 4
Comparative transcriptome analysis of juniper branches infected by Gymnosporangium spp. highlights their different infection strategies associated with cytokinins
Chenxi Shao, Siqi Tao, Ying‐Mei Liang
BMC Genomics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 4
A single-cell atlas of West African lungfish respiratory system reveals evolutionary adaptations to terrestrialization
Ruihua Zhang, Qun Liu, Shanshan Pan, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 4
De novo transcriptome assembly of the oak processionary moth Thaumetopoea processionea
Johan Zicola, Prasad Dasari, Katharina Klara Hahn, et al.
Research Square (Research Square) (2024)
Open Access | Times Cited: 1
Rethinking eco‐evo studies of gene expression for non‐model organisms in the genomic era
Adam H. Freedman, Timothy B. Sackton
Molecular Ecology (2024)
Open Access | Times Cited: 1
RNA‐Seq Data Analysis: A Practical Guide for Model and Non‐Model Organisms
Enrique Pola‐Sánchez, Karen Magdalena Hernández‐Martínez, Rafael Pérez‐Estrada, et al.
Current Protocols (2024) Vol. 4, Iss. 5
Open Access | Times Cited: 1
De Novo Transcriptome Assembly of Cedar (Cedrela odorata L.) and Differential Gene Expression Involved in Herbivore Resistance
Luis Felipe Guzmán, Bibiana Tirado, Carlos Iván Cruz-Cárdenas, et al.
Current Issues in Molecular Biology (2024) Vol. 46, Iss. 8, pp. 8794-8806
Open Access | Times Cited: 1
Comparative Genomics Uncovers the Evolutionary Dynamics of Detoxification and Insecticide Target Genes Across 11 Phlebotomine Sand Flies
Jason Charamis, Sofia Balaska, Panagiotis Ioannidis, et al.
Genome Biology and Evolution (2024) Vol. 16, Iss. 9
Open Access | Times Cited: 1
Proteotranscriptomics – A facilitator in omics research
Michal Levin, Falk Butter
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 3667-3675
Open Access | Times Cited: 7
The value of genotype-specific reference for transcriptome analyses in barley
Wenbin Guo, Max Coulter, Robbie Waugh, et al.
Life Science Alliance (2022) Vol. 5, Iss. 8, pp. e202101255-e202101255
Open Access | Times Cited: 6
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