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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

TransPi—a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Ramón E. Rivera‐Vicéns, Catalina A. García‐Escudero, Nicola Conci, et al.
Molecular Ecology Resources (2022) Vol. 22, Iss. 5, pp. 2070-2086
Open Access | Times Cited: 29

Showing 1-25 of 29 citing articles:

Modern venomics—Current insights, novel methods, and future perspectives in biological and applied animal venom research
Björn M. von Reumont, Gregor Anderluh, Agostinho Antunes, et al.
GigaScience (2022) Vol. 11
Open Access | Times Cited: 71
A simple guide to de novo transcriptome assembly and annotation
Venket Raghavan, Louis Kraft, Fantin Mesny, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 2
Open Access | Times Cited: 95
The genome of the venomous snail Lautoconus ventricosus sheds light on the origin of conotoxin diversity
José Ramón Pardos-Blas, Iker Irisarri, Samuel Abalde, et al.
GigaScience (2021) Vol. 10, Iss. 5
Open Access | Times Cited: 44
Proteome metabolome and transcriptome data for three Symbiodiniaceae under ambient and heat stress conditions
Emma F. Camp, Tim Kahlke, Bethany Signal, et al.
Scientific Data (2022) Vol. 9, Iss. 1
Open Access | Times Cited: 29
Transcriptomic Analysis across Crayfish (Cherax quadricarinatus) Claw Regeneration Reveals Potential Stem Cell Sources for Cultivated Crustacean Meat
Lisa Musgrove, Avani Bhojwani, Cameron Hyde, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 16, pp. 8623-8623
Open Access | Times Cited: 5
Exposure to virgin and marine incubated microparticles of biodegradable and conventional polymers modulates the hepatopancreas transcriptome of Mytilus galloprovincialis
Giacomo Limonta, Cristina Panti, María Cristina Fossi, et al.
Journal of Hazardous Materials (2024) Vol. 468, pp. 133819-133819
Open Access | Times Cited: 4
Alphaflexivirus Genomes in Stony Coral Tissue Loss Disease-Affected, Disease-Exposed, and Disease-Unexposed Coral Colonies in the U.S. Virgin Islands
Alex J. Veglia, Kelsey M. Beavers, Emily W. Van Buren, et al.
Microbiology Resource Announcements (2022) Vol. 11, Iss. 2
Open Access | Times Cited: 16
The genome of the reef-building glass spongeAphrocallistes vastusprovides insights into silica biomineralization
Warren R. Francis, Michael Eitel, Sergio Vargas, et al.
Royal Society Open Science (2023) Vol. 10, Iss. 6
Open Access | Times Cited: 9
Draft genome and transcriptome of Nepenthes mirabilis, a carnivorous plant in China
Yuan Gao, Hao-Bin Liao, Ting-Hong Liu, et al.
BMC Genomic Data (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 7
Trans2express – de novo transcriptome assembly pipeline optimized for gene expression analysis
Aleksandra M. Kasianova, Aleksey A. Penin, Mikhail I. Schelkunov, et al.
Plant Methods (2024) Vol. 20, Iss. 1
Open Access | Times Cited: 2
A Phylogenomic Backbone for Acoelomorpha Inferred from Transcriptomic Data
Samuel Abalde, Ulf Jondelius
Systematic Biology (2024)
Open Access | Times Cited: 2
Molecular and mineral responses of corals grown under artificial Calcite Sea conditions
Nicola Conci, Erika Griesshaber, Ramón E. Rivera‐Vicéns, et al.
Geobiology (2024) Vol. 22, Iss. 1
Open Access | Times Cited: 1
De novo assembly of transcriptomes and differential gene expression analysis using short-read data from emerging model organisms – a brief guide
Daniel J. Jackson, Nicolas Cerveau, Nico Posnien
Frontiers in Zoology (2024) Vol. 21, Iss. 1
Open Access | Times Cited: 1
A cloud-based training module for efficient de novo transcriptome assembly using Nextflow and Google cloud
Ryan P. Seaman, Ross Campbell, Valena Doe, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 4
Open Access | Times Cited: 1
Transcriptomic Analysis across Crayfish (<i>Cherax quadricarinatus</i>) Claw Regeneration Reveals Potential Stem Cell Sources for Cultivated Crustacean Meat
Lisa Musgrove, Avani Bhojwani, Cameron Hyde, et al.
(2024)
Open Access | Times Cited: 1
Transcriptomics analysis of mangosteen ripening revealed active regulation of ethylene, anthocyanin and xanthone biosynthetic genes
Ili Nadhirah Jamil, Azhani Abdul-Rahman, Hoe‐Han Goh, et al.
Postharvest Biology and Technology (2023) Vol. 198, pp. 112257-112257
Closed Access | Times Cited: 3
Physiological and transcriptomic effects of formulated diets including the prebiotics inulin, β-glucan, and chitosan on juveniles of Totoaba macdonaldi
Oscar E. Juárez, Clara E. Galindo‐Sánchez, Fabiola Lafarga‐De la Cruz, et al.
Aquaculture International (2023) Vol. 32, Iss. 1, pp. 61-85
Closed Access | Times Cited: 2
Exposure to Virgin and Marine Incubated Microparticles of Biodegradable and Conventional Polymers Modulates the Hepatopancreas Transcriptome of Mytilus Galloprovincialis
Giacomo Limonta, Cristina Panti, María Cristina Fossi, et al.
(2024)
Closed Access
Proteomic analysis of the Aggregation Factor from the spongeClathria (Microciona) proliferasuggests an ancient protein domain toolkit for allorecognition in animals
Fabian Ruperti, Monika Dzieciątkowska, M. Sabrina Pankey, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Transcriptomic Analysis of Secondary Metabolite Biosynthesis in Solanaceae Medicinal Plants
P.H.S. Dasanya, Madhavi Hewadikaram
Journal of Herbal Medicine (2024) Vol. 46, pp. 100899-100899
Closed Access
Ectopic cambia in Japanese wisteria (Wisteria floribunda) vines are associated with the expression of conservedKNOXgenes
Israel L. Cunha Neto, Anthony A. Snead, Jacob B. Landis, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Genomics of Terpene Biosynthesis in Dictyoceratid Sponges (Porifera) – What Do We (Not) Know?
Adrian Galitz, Sergio Vargas, Olivier P. Thomas, et al.
Chemistry & Biodiversity (2024) Vol. 21, Iss. 9
Open Access
TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation
Aysevil Pektas, Frank Panitz, Bo Thomsen
Genes (2024) Vol. 15, Iss. 12, pp. 1547-1547
Open Access
Comprehensive Analysis of the Influence of Technical and Biological Variations on De Novo Assembly of RNA-Seq Datasets
Sergio González, Rivarola Maximo, R.R. Andrés, et al.
Bioinformatics and Biology Insights (2024) Vol. 18
Open Access
Proteomic analysis of the sponge Aggregation Factor implicates an ancient toolkit for allorecognition and adhesion in animals
Fabian Ruperti, Monika Dzieciątkowska, M. Sabrina Pankey, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 52
Closed Access
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