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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Stacks: an analysis tool set for population genomics
Julian Catchen, Paul A. Hohenlohe, Susan Bassham, et al.
Molecular Ecology (2013) Vol. 22, Iss. 11, pp. 3124-3140
Open Access | Times Cited: 3672

Showing 1-25 of 3672 citing articles:

Harnessing the power of RADseq for ecological and evolutionary genomics
Kimberly R. Andrews, Jeffrey M. Good, Michael R. Miller, et al.
Nature Reviews Genetics (2016) Vol. 17, Iss. 2, pp. 81-92
Open Access | Times Cited: 1345
Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics
Nicolas C. Rochette, Angel G. Rivera‐Colón, Julian Catchen
Molecular Ecology (2019) Vol. 28, Iss. 21, pp. 4737-4754
Open Access | Times Cited: 937
Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
Christian Schlötterer, Raymond Tobler, Robert Kofler, et al.
Nature Reviews Genetics (2014) Vol. 15, Iss. 11, pp. 749-763
Closed Access | Times Cited: 751
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
Deren A. R. Eaton
Bioinformatics (2014) Vol. 30, Iss. 13, pp. 1844-1849
Open Access | Times Cited: 723
ipyrad: Interactive assembly and analysis of RADseq datasets
Deren A. R. Eaton, Isaac Overcast
Bioinformatics (2019) Vol. 36, Iss. 8, pp. 2592-2594
Open Access | Times Cited: 692
Ancient hybridization fuels rapid cichlid fish adaptive radiations
Joana I. Meier, David A. Marques, Salome Mwaiko, et al.
Nature Communications (2017) Vol. 8, Iss. 1
Open Access | Times Cited: 635
Lost in parameter space: a road map for stacks
Josephine R. Paris, Jamie R. Stevens, Julian Catchen
Methods in Ecology and Evolution (2017) Vol. 8, Iss. 10, pp. 1360-1373
Open Access | Times Cited: 572
Genotyping‐by‐sequencing in ecological and conservation genomics
Shawn R. Narum, C. Alex Buerkle, John W. Davey, et al.
Molecular Ecology (2013) Vol. 22, Iss. 11, pp. 2841-2847
Open Access | Times Cited: 558
Improved reference genome of Aedes aegypti informs arbovirus vector control
Benjamin J. Matthews, Olga Dudchenko, Sarah B. Kingan, et al.
Nature (2018) Vol. 563, Iss. 7732, pp. 501-507
Open Access | Times Cited: 525
Genotyping‐in‐Thousands by sequencing (GT‐seq): A cost effective SNP genotyping method based on custom amplicon sequencing
Nathan R. Campbell, Stephanie A. Harmon, Shawn R. Narum
Molecular Ecology Resources (2014) Vol. 15, Iss. 4, pp. 855-867
Open Access | Times Cited: 497
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
Matthew B. Hufford, Arun S. Seetharam, Margaret Woodhouse, et al.
Science (2021) Vol. 373, Iss. 6555, pp. 655-662
Open Access | Times Cited: 481
Deriving genotypes from RAD-seq short-read data using Stacks
Nicolas C. Rochette, Julian Catchen
Nature Protocols (2017) Vol. 12, Iss. 12, pp. 2640-2659
Closed Access | Times Cited: 452
Genomic signals of selection predict climate-driven population declines in a migratory bird
Rachael A. Bay, Ryan J. Harrigan, Vinh Le Underwood, et al.
Science (2018) Vol. 359, Iss. 6371, pp. 83-86
Open Access | Times Cited: 448
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms
Jonathan B. Puritz, Christopher M. Hollenbeck, John R. Gold
PeerJ (2014) Vol. 2, pp. e431-e431
Open Access | Times Cited: 439
Restriction site‐associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
Alicia Mastretta‐Yanes, Nils Arrigo, Nadir Álvarez, et al.
Molecular Ecology Resources (2014) Vol. 15, Iss. 1, pp. 28-41
Closed Access | Times Cited: 379
These aren’t the loci you’e looking for: Principles of effective SNP filtering for molecular ecologists
Shannon J. O’Leary, Jonathan B. Puritz, Stuart C. Willis, et al.
Molecular Ecology (2018) Vol. 27, Iss. 16, pp. 3193-3206
Open Access | Times Cited: 359
Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools
France Dufresne, Marc Stift, Roland Vergilino, et al.
Molecular Ecology (2013) Vol. 23, Iss. 1, pp. 40-69
Open Access | Times Cited: 342
RADpainter and fineRADstructure: Population Inference from RADseq Data
Milan Malinsky, Emiliano Trucchi, Daniel J. Lawson, et al.
Molecular Biology and Evolution (2018) Vol. 35, Iss. 5, pp. 1284-1290
Open Access | Times Cited: 341
Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference
Aaron B. A. Shafer, Claire Peart, Sergio Tusso, et al.
Methods in Ecology and Evolution (2016) Vol. 8, Iss. 8, pp. 907-917
Open Access | Times Cited: 338
Minor allele frequency thresholds strongly affect population structure inference with genomic data sets
Ethan Linck, C.J. Battey
Molecular Ecology Resources (2019) Vol. 19, Iss. 3, pp. 639-647
Open Access | Times Cited: 334
Rapid evolution of a native species following invasion by a congener
Yoel E. Stuart, Todd S. Campbell, Paul A. Hohenlohe, et al.
Science (2014) Vol. 346, Iss. 6208, pp. 463-466
Closed Access | Times Cited: 318
Wild Sex in Zebrafish: Loss of the Natural Sex Determinant in Domesticated Strains
Catherine Wilson, Samantha K. High, Braedan M. McCluskey, et al.
Genetics (2014) Vol. 198, Iss. 3, pp. 1291-1308
Open Access | Times Cited: 313
Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species
Alison G. Nazareno, Jordan B. Bemmels, Christopher W. Dick, et al.
Molecular Ecology Resources (2017) Vol. 17, Iss. 6, pp. 1136-1147
Open Access | Times Cited: 279
Antarctica’s ecological isolation will be broken by storm-driven dispersal and warming
Ceridwen I. Fraser, Adele K. Morrison, Andrew McC. Hogg, et al.
Nature Climate Change (2018) Vol. 8, Iss. 8, pp. 704-708
Closed Access | Times Cited: 279
Winter storms drive rapid phenotypic, regulatory, and genomic shifts in the green anole lizard
Shane C. Campbell‐Staton, Zachary A. Cheviron, Nicholas Rochette, et al.
Science (2017) Vol. 357, Iss. 6350, pp. 495-498
Open Access | Times Cited: 273
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