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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Single-cell nuclear architecture across cell types in the mouse brain
Yodai Takei, Shiwei Zheng, Jina Yun, et al.
Science (2021) Vol. 374, Iss. 6567, pp. 586-594
Open Access | Times Cited: 108

Showing 1-25 of 108 citing articles:

The emerging landscape of spatial profiling technologies
Jeffrey R. Moffitt, Emma Lundberg, Holger Heyn
Nature Reviews Genetics (2022) Vol. 23, Iss. 12, pp. 741-759
Closed Access | Times Cited: 277
The expanding vistas of spatial transcriptomics
Luyi Tian, Fei Chen, Evan Z. Macosko
Nature Biotechnology (2022) Vol. 41, Iss. 6, pp. 773-782
Closed Access | Times Cited: 268
Spatially resolved epigenomic profiling of single cells in complex tissues
Tian Lu, Cheen Euong Ang, Xiaowei Zhuang
Cell (2022) Vol. 185, Iss. 23, pp. 4448-4464.e17
Open Access | Times Cited: 118
The spatial organization of transcriptional control
Antonina Hafner, Alistair N. Boettiger
Nature Reviews Genetics (2022) Vol. 24, Iss. 1, pp. 53-68
Closed Access | Times Cited: 116
Clinical application of advanced multi-omics tumor profiling: Shaping precision oncology of the future
Dilara Akhoundova, Mark A. Rubin
Cancer Cell (2022) Vol. 40, Iss. 9, pp. 920-938
Open Access | Times Cited: 94
Genome organization around nuclear speckles drives mRNA splicing efficiency
Prashant Bhat, Amy Chow, Benjamin Emert, et al.
Nature (2024) Vol. 629, Iss. 8014, pp. 1165-1173
Closed Access | Times Cited: 58
Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project
Job Dekker, Frank Alber, Sarah Aufmkolk, et al.
Molecular Cell (2023) Vol. 83, Iss. 15, pp. 2624-2640
Open Access | Times Cited: 56
Simultaneous profiling of spatial gene expression and chromatin accessibility during mouse brain development
Fuqing Jiang, Xin Zhou, Yingying Qian, et al.
Nature Methods (2023) Vol. 20, Iss. 7, pp. 1048-1057
Closed Access | Times Cited: 44
Single-cell multiplex chromatin and RNA interactions in ageing human brain
Xingzhao Wen, Zhifei Luo, Wenxin Zhao, et al.
Nature (2024) Vol. 628, Iss. 8008, pp. 648-656
Open Access | Times Cited: 23
Epigenetic regulatory layers in the 3D nucleus
Andréa Willemin, Dominik Szabó, Ana Pombo
Molecular Cell (2024) Vol. 84, Iss. 3, pp. 415-428
Open Access | Times Cited: 19
The era of 3D and spatial genomics
Britta A. M. Bouwman, Nicola Crosetto, Magda Bienko
Trends in Genetics (2022) Vol. 38, Iss. 10, pp. 1062-1075
Open Access | Times Cited: 53
dcHiC detects differential compartments across multiple Hi-C datasets
Abhijit Chakraborty, Jeffrey Wang, Ferhat Ay
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 46
Elastic dosage compensation by X-chromosome upregulation
Antonio Lentini, Huaitao Cheng, Joyce Noble, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 39
Spatial transcriptomics in neuroscience
Namyoung Jung, Tae-Kyung Kim
Experimental & Molecular Medicine (2023) Vol. 55, Iss. 10, pp. 2105-2115
Open Access | Times Cited: 27
Spatial Transcriptomics: Emerging Technologies in Tissue Gene Expression Profiling
Agustín Robles-Remacho, Rosario M. Sánchez‐Martín, Juan J. Díaz‐Mochón
Analytical Chemistry (2023) Vol. 95, Iss. 42, pp. 15450-15460
Open Access | Times Cited: 26
High-resolution spatial multi-omics reveals cell-type specific nuclear compartments
Yodai Takei, Yujing Yang, Jonathan A. White, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 25
Chromosome compartmentalization: causes, changes, consequences, and conundrums
Heng Li, Christopher Playter, Priyojit Das, et al.
Trends in Cell Biology (2024) Vol. 34, Iss. 9, pp. 707-727
Closed Access | Times Cited: 14
Perturb-tracing enables high-content screening of multi-scale 3D genome regulators
Yubao Cheng, Mengwei Hu, Bing Yang, et al.
Nature Methods (2025)
Open Access | Times Cited: 1
Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi
Ruochi Zhang, Tianming Zhou, Jian Ma
Cell Systems (2022) Vol. 13, Iss. 10, pp. 798-807.e6
Open Access | Times Cited: 30
A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH
Bojing Blair Jia, Adam Jussila, Colin Kern, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 7, pp. 1004-1017
Open Access | Times Cited: 19
Recent progress and challenges in single-cell imaging of enhancer–promoter interaction
Liangfu Chen, Joo Sang Lee, Alistair N. Boettiger
Current Opinion in Genetics & Development (2023) Vol. 79, pp. 102023-102023
Closed Access | Times Cited: 19
Enablers and challenges of spatial omics, a melting pot of technologies
Theodore Alexandrov, Julio Sáez-Rodríguez, Sinem K. Saka
Molecular Systems Biology (2023) Vol. 19, Iss. 11
Open Access | Times Cited: 17
3D genome organization around nuclear speckles drives mRNA splicing efficiency
Prashant Bhat, Amy Chow, Benjamin Emert, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 16
Evaluating the role of the nuclear microenvironment in gene function by population-based modeling
Aslı Yıldırım, Nan Hua, Lorenzo Boninsegna, et al.
Nature Structural & Molecular Biology (2023) Vol. 30, Iss. 8, pp. 1193-1206
Open Access | Times Cited: 14
Contributions of 3D chromatin structure to cell-type-specific gene regulation
Marie Schaeffer, Marcelo Nöllmann
Current Opinion in Genetics & Development (2023) Vol. 79, pp. 102032-102032
Closed Access | Times Cited: 13
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