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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton
Harriet Alexander, Sarah K. Hu, Arianna I. Krinos, et al.
mBio (2023) Vol. 14, Iss. 6
Open Access | Times Cited: 31

Showing 1-25 of 31 citing articles:

ColabFold: making protein folding accessible to all
Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki, et al.
Nature Methods (2022) Vol. 19, Iss. 6, pp. 679-682
Open Access | Times Cited: 6674
Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Tom O. Delmont, Morgan Gaïa, Damien Daniel Hinsinger, et al.
Cell Genomics (2022) Vol. 2, Iss. 5, pp. 100123-100123
Open Access | Times Cited: 137
Fast and robust metagenomic sequence comparison through sparse chaining with skani
Jim Shaw, Yun William Yu
Nature Methods (2023) Vol. 20, Iss. 11, pp. 1661-1665
Open Access | Times Cited: 61
Mixoplankton and mixotrophy: future research priorities
Nicole C. Millette, Rebecca J. Gast, Jessica Y. Luo, et al.
Journal of Plankton Research (2023) Vol. 45, Iss. 4, pp. 576-596
Open Access | Times Cited: 33
Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments
Zhifeng Zhang, Lirui Liu, Yue-Ping Pan, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 23
Identifying Eukaryotes and Factors Influencing Their Biogeography in Drinking Water Metagenomes
Marco Gabrielli, Zihan Dai, Vincent Delafont, et al.
Environmental Science & Technology (2023) Vol. 57, Iss. 9, pp. 3645-3660
Open Access | Times Cited: 15
Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes
J. Saraiva, Alexander Bartholomäus, Rodolfo Brizola Toscan, et al.
Molecular Ecology Resources (2023) Vol. 23, Iss. 5, pp. 1066-1076
Open Access | Times Cited: 14
Petascale Homology Search for Structure Prediction
Sewon Lee, Gyuri Kim, Eli Levy Karin, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 14
Predicting metabolic modules in incomplete bacterial genomes with MetaPathPredict
David Geller-McGrath, Kishori M. Konwar, Virginia P. Edgcomb, et al.
eLife (2024) Vol. 13
Open Access | Times Cited: 5
Petabase-Scale Homology Search for Structure Prediction
Sewon Lee, Gyuri Kim, Eli Levy Karin, et al.
Cold Spring Harbor Perspectives in Biology (2024) Vol. 16, Iss. 5, pp. a041465-a041465
Closed Access | Times Cited: 4
Pitfalls in gut single-cell eukaryote research
Raúl Y. Tito, Christen Rune Stensvold
Trends in Parasitology (2025)
Closed Access
Metagenome-assembled-genomes recovered from the Arctic drift expedition MOSAiC
William Boulton, Asaf Salamov, Igor V. Grigoriev, et al.
Scientific Data (2025) Vol. 12, Iss. 1
Open Access
Functional annotation of eukaryotic genes from sedimentary ancient DNA
Uğur Çabuk, Ulrike Herzschuh, Lars Harms, et al.
Frontiers in Ecology and Evolution (2025) Vol. 13
Open Access
xTrimoPGLM: unified 100-billion-parameter pretrained transformer for deciphering the language of proteins
Bo Chen, Xingyi Cheng, Li Pan, et al.
Nature Methods (2025)
Closed Access
A cost and community perspective on the barriers to microbiome data reuse
Julia M. Kelliher, L. Johnson, Francisca E. Rodriguez, et al.
Frontiers in Bioinformatics (2025) Vol. 5
Open Access
Eukfinder: a pipeline to retrieve microbial eukaryote genome sequences from metagenomic data
Dandan Zhao, Dayana E. Salas‐Leiva, Shelby K. Williams, et al.
mBio (2025)
Open Access
Unveiling the microbial realm with VEBA 2.0: a modular bioinformatics suite for end-to-end genome-resolved prokaryotic, (micro)eukaryotic and viral multi-omics from either short- or long-read sequencing
Josh L. Espinoza, Allan R. Phillips, Melanie B. Prentice, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 14, pp. e63-e63
Open Access | Times Cited: 3
Missing microbial eukaryotes and misleading meta-omic conclusions
Arianna I. Krinos, Margaret Mars Brisbin, Sarah K. Hu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Metagenome assembled genomes are for eukaryotes too
Ramón Massana, David López-Escardó
Cell Genomics (2022) Vol. 2, Iss. 5, pp. 100130-100130
Open Access | Times Cited: 15
VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
Josh L. Espinoza, Christopher L. Dupont
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 15
A New Dawn for Protist Biogeography
Eveline Pinseel, Koen Sabbe, Elie Verleyen, et al.
Global Ecology and Biogeography (2024) Vol. 33, Iss. 12
Open Access | Times Cited: 2
Using metagenomic data to boost protein structure prediction and discovery
Qingzhen Hou, Fabrizio Pucci, Fengming Pan, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 434-442
Open Access | Times Cited: 10
Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly
Arianna I. Krinos, Natalie R. Cohen, Michael J. Follows, et al.
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 6
Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory
Aleix Obiol, David López-Escardó, Eric D. Salomaki, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 5
Exophiala chapopotensis sp. nov., an extremotolerant black yeast from an oil-polluted soil in Mexico; phylophenetic approach to species hypothesis in the Herpotrichiellaceae family
Martín R. Ide-Pérez, Ayixón Sánchez‐Reyes, Jorge Luis Folch‐Mallol, et al.
PLoS ONE (2024) Vol. 19, Iss. 2, pp. e0297232-e0297232
Open Access | Times Cited: 1
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