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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Deciphering Active Prophages from Metagenomes
Kristopher Kieft, Karthik Anantharaman
mSystems (2022) Vol. 7, Iss. 2
Open Access | Times Cited: 38

Showing 1-25 of 38 citing articles:

Profiling the human intestinal environment under physiological conditions
Dari Shalon, Rebecca N. Culver, Jessica A. Grembi, et al.
Nature (2023) Vol. 617, Iss. 7961, pp. 581-591
Open Access | Times Cited: 266
Short- and long-read metagenomics expand individualized structural variations in gut microbiomes
Liang Chen, Na Zhao, Yīmíng Bào, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 71
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Joachim Johansen, Koji Atarashi, Yasumichi Arai, et al.
Nature Microbiology (2023) Vol. 8, Iss. 6, pp. 1064-1078
Closed Access | Times Cited: 56
Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes
Lei Liu, Yang Yu, Yu Deng, et al.
Microbiome (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 61
vRhyme enables binning of viral genomes from metagenomes
Kristopher Kieft, Alyssa Adams, Rauf Salamzade, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. 14, pp. e83-e83
Open Access | Times Cited: 60
Bacteriophages playing nice: Lysogenic bacteriophage replication stable in the human gut microbiota
Steven G. Sutcliffe, Alejandro Reyes, Corinne F. Maurice
iScience (2023) Vol. 26, Iss. 2, pp. 106007-106007
Open Access | Times Cited: 35
A subset of viruses thrives following microbial resuscitation during rewetting of a seasonally dry California grassland soil
Alexa M. Nicolas, Ella T. Sieradzki, Jennifer Pett‐Ridge, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 25
Spatial mapping of mobile genetic elements and their bacterial hosts in complex microbiomes
Benjamin Grodner, Hao Shi, Owen Farchione, et al.
Nature Microbiology (2024) Vol. 9, Iss. 9, pp. 2262-2277
Open Access | Times Cited: 11
Viruses contribute to microbial diversification in the rumen ecosystem and are associated with certain animal production traits
Ming Yan, Zhongtang Yu
Microbiome (2024) Vol. 12, Iss. 1
Open Access | Times Cited: 10
Alterations in fecal virome and bacteriome virome interplay in children with autism spectrum disorder
Yating Wan, Lin Zhang, Zhilu Xu, et al.
Cell Reports Medicine (2024) Vol. 5, Iss. 2, pp. 101409-101409
Open Access | Times Cited: 9
Interactions and evolutionary relationships among bacterial mobile genetic elements
Andrew S. Lang, Alison Buchan, Vincent Burrus
Nature Reviews Microbiology (2025)
Closed Access | Times Cited: 1
Phage-host interactions: The neglected part of biological wastewater treatment
Xiang Tang, Changzheng Fan, Guangming Zeng, et al.
Water Research (2022) Vol. 226, pp. 119183-119183
Closed Access | Times Cited: 35
Fecal virome transfer improves proliferation of commensal gut Akkermansia muciniphila and unexpectedly enhances the fertility rate in laboratory mice
Torben Sølbeck Rasmussen, Caroline M. Junker Mentzel, Malene Refslund Danielsen, et al.
Gut Microbes (2023) Vol. 15, Iss. 1
Open Access | Times Cited: 18
Virus genomics: what is being overlooked?
Kristopher Kieft, Karthik Anantharaman
Current Opinion in Virology (2022) Vol. 53, pp. 101200-101200
Open Access | Times Cited: 24
Historical contingencies and phage induction diversify bacterioplankton communities at the microscale
Rachel E. Szabo, Sammy Pontrelli, Jacopo Grilli, et al.
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 30
Open Access | Times Cited: 23
Implication of Gut Mycobiome and Virome in Type-2 Diabetes Mellitus: Uncovering the Hidden Players
Mona Kriti, Raj Ojha, Samradhi Singh, et al.
Phenomics (2025)
Closed Access
Viral activity in lake analogs of anoxic early Earth oceans
Natascha S. Varona, Bailey Wallace, Alice Bosco‐Santos, et al.
Microbiome (2025) Vol. 13, Iss. 1
Open Access
Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome
Jamie Lopez Bernal, Saria McKeithen-Mead, Handuo Shi, et al.
Current Biology (2025)
Closed Access
The gut virome and the relevance of temperate phages in human health
Laura Avellaneda-Franco, Sofia Dahlman, Jeremy J. Barr
Frontiers in Cellular and Infection Microbiology (2023) Vol. 13
Open Access | Times Cited: 10
Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects
Philipp C. Münch, Claudia Eberl, Simon Woelfel, et al.
Cell Host & Microbe (2023) Vol. 31, Iss. 6, pp. 1007-1020.e4
Closed Access | Times Cited: 9
Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria
Peter Erdmann Dougherty, Tue Kjærgaard Nielsen, Leise Riber, et al.
The ISME Journal (2023) Vol. 17, Iss. 12, pp. 2415-2425
Open Access | Times Cited: 9
Metagenomic and metatranscriptomic insights into sulfate-reducing bacteria in a revegetated acidic mine wasteland
Jintian Li, Pu Jia, Xiaojuan Wang, et al.
npj Biofilms and Microbiomes (2022) Vol. 8, Iss. 1
Open Access | Times Cited: 13
Viruses of sulfur oxidizing phototrophs encode genes for pigment, carbon, and sulfur metabolisms
Poppy J. Hesketh-Best, Alice Bosco‐Santos, Sofia Garcia, et al.
Communications Earth & Environment (2023) Vol. 4, Iss. 1
Open Access | Times Cited: 7
Phenotypic characterization and genomic analysis of Limosilactobacillus fermentum phage
Can Zhang, Xingyu Quan, Weiqi Lian, et al.
Current Research in Food Science (2024) Vol. 8, pp. 100748-100748
Open Access | Times Cited: 2
Decoupling of strain- and intrastrain-level interactions of microbiomes in a sponge holobiont
W. Wang, Weizhi Song, Marwan E. Majzoub, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 2
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