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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

MetaPhage: an Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data
Mattia Pandolfo, Andrea Telatin, Gioele Lazzari, et al.
mSystems (2022) Vol. 7, Iss. 5
Open Access | Times Cited: 33

Showing 1-25 of 33 citing articles:

Pharokka: a fast scalable bacteriophage annotation tool
George Bouras, Roshan Nepal, Ghais Houtak, et al.
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 222
Sequencing-based analysis of microbiomes
Yishay Pinto, Ami S. Bhatt
Nature Reviews Genetics (2024) Vol. 25, Iss. 12, pp. 829-845
Closed Access | Times Cited: 23
Phage-inclusive profiling of human gut microbiomes with Phanta
Yishay Pinto, Meenakshi Chakraborty, Navami Jain, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 4, pp. 651-662
Closed Access | Times Cited: 30
Soil viral community dynamics over seven years of heat disturbance: spatial variation exceeds temporal in annually sampled soils
Samuel E. Barnett, Ashley Shade
Soil Biology and Biochemistry (2025), pp. 109741-109741
Closed Access | Times Cited: 1
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models
Guillermo Rangel-Piñeros, Alexandre Almeida, Martín Beracochea, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011422-e1011422
Open Access | Times Cited: 19
Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods
Bridget Hegarty, James A. Riddell, Eric Bastien, et al.
mSystems (2024) Vol. 9, Iss. 3
Open Access | Times Cited: 8
Nanopore and Illumina sequencing reveal different viral populations from human gut samples
Ryan Cook, Andrea Telatin, Shen-Yuan Hsieh, et al.
Microbial Genomics (2024) Vol. 10, Iss. 4
Open Access | Times Cited: 6
Exploring the gut DNA virome in fecal immunochemical test stool samples reveals associations with lifestyle in a large population-based study
Paula Istvan, Einar Birkeland, Ekaterina Avershina, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 5
Marine viruses disperse bidirectionally along the natural water cycle
Janina Rahlff, Sarah P. Esser, Julia Plewka, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 10
Metagenomic investigation of viruses in green sea turtles (Chelonia mydas)
Hongwei Li, Yuan Chen, Zhongrong Xia, et al.
Frontiers in Microbiology (2025) Vol. 16
Open Access
Community structure and metabolic potentials of keystone taxa and their associated bacteriophages within rice root endophytic microbiome in response to metal(loid)s contamination
Yanlong Jia, Duanyi Huang, Xiaolong Lan, et al.
Environmental Pollution (2025), pp. 126028-126028
Closed Access
Unlocking the microbial studies through computational approaches: how far have we reached?
Rajnish Kumar, Garima Yadav, Mohammed Kuddus, et al.
Environmental Science and Pollution Research (2023) Vol. 30, Iss. 17, pp. 48929-48947
Open Access | Times Cited: 9
The phageome of patients with ulcerative colitis treated with donor fecal microbiota reveals markers associated with disease remission
Marwan E. Majzoub, Sudarshan Paramsothy, Craig Haifer, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Hecatomb: an integrated software platform for viral metagenomics
Michael J. Roach, Sarah J. Beecroft, Kathie A. Mihindukulasuriya, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 2
Metaphor—A workflow for streamlined assembly and binning of metagenomes
Vinícius Salazar, Babak Shaban, Maria del Mar Quiroga, et al.
GigaScience (2022) Vol. 12
Open Access | Times Cited: 10
Ecogenomics and cultivation reveal distinctive viral-bacterial communities in the surface microlayer of a Baltic Sea slick
Janina Rahlff, Matthias Wietz, Helge‐Ansgar Giebel, et al.
ISME Communications (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 5
Viral challenges and adaptations between Central Arctic Ocean and atmosphere
Janina Rahlff, George Westmeijer, Julia Weißenbach, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Comparative Analyses of Bacteriophage Genomes
F. Rossi, Vinicius Sousa Flores, Guillermo Uceda-Campos, et al.
Methods in molecular biology (2024), pp. 427-453
Closed Access | Times Cited: 1
The human blood harbors a phageome which differs in Crohn’s disease
Quentin Lamy-Besnier, Ilias Theodorou, Maud Billaud, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
T7 DNA polymerase treatment improves quantitative sequencing of both double-stranded and single-stranded DNA viruses
Maud Billaud, Ilias Theodorou, Quentin Lamy-Besnier, et al.
Peer Community Journal (2024) Vol. 4
Open Access | Times Cited: 1
Surface microlayer-mediated virome dissemination in the Central Arctic
Janina Rahlff, George Westmeijer, Julia Weißenbach, et al.
Microbiome (2024) Vol. 12, Iss. 1
Open Access | Times Cited: 1
Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD+
Cunyuan Li, Kaiping Liu, Chengxiang Gu, et al.
Microbiome (2024) Vol. 12, Iss. 1
Open Access | Times Cited: 1
Benchmarking informatics approaches for virus discovery: Caution is needed when combiningin silicoidentification methods
Bridget Hegarty, James A. Riddell, G Eric Bastien, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Exploring the gut virome in fecal immunochemical test stool samples reveals novel associations with lifestyle in a large population-based study
Trine B. Rounge, Paula Istvan, Einar Birkeland, et al.
Research Square (Research Square) (2023)
Open Access | Times Cited: 1
Investigating the Human Intestinal DNA Virome and Predicting Disease-Associated Virus–Host Interactions in Severe Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)
Shen-Yuan Hsieh, George M. Savva, Andrea Telatin, et al.
International Journal of Molecular Sciences (2023) Vol. 24, Iss. 24, pp. 17267-17267
Open Access | Times Cited: 1
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