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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets
Kalen Cantrell, Marcus W. Fedarko, Gibraan Rahman, et al.
mSystems (2021) Vol. 6, Iss. 2
Open Access | Times Cited: 44

Showing 1-25 of 44 citing articles:

Greengenes2 unifies microbial data in a single reference tree
Daniel McDonald, Yueyu Jiang, Metin Balaban, et al.
Nature Biotechnology (2023) Vol. 42, Iss. 5, pp. 715-718
Open Access | Times Cited: 201
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
Justin P. Shaffer, Louis‐Félix Nothias, Luke Thompson, et al.
Nature Microbiology (2022) Vol. 7, Iss. 12, pp. 2128-2150
Open Access | Times Cited: 110
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
Qiyun Zhu, Shi Huang, Antonio González, et al.
mSystems (2022) Vol. 7, Iss. 2
Open Access | Times Cited: 75
Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
Susana P. Gaudêncio, Engin Bayram, Lada Lukić‐Bilela, et al.
Marine Drugs (2023) Vol. 21, Iss. 5, pp. 308-308
Open Access | Times Cited: 63
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables
Zachary M. Burcham, Aeriel D. Belk, Bridget McGivern, et al.
Nature Microbiology (2024) Vol. 9, Iss. 3, pp. 595-613
Open Access | Times Cited: 23
Taxonium, a web-based tool for exploring large phylogenetic trees
Theo Sanderson
eLife (2022) Vol. 11
Open Access | Times Cited: 46
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
Clarisse Marotz, Pedro Belda‐Ferre, Farhana Ali, et al.
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 49
Greengenes2 enables a shared data universe for microbiome studies
Daniel McDonald, Yueyu Jiang, Metin Balaban, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 30
Systemic antibiotic treatment of cows with metritis early postpartum does not change the progression of uterine disease or the uterine microbiome at 1 month postpartum
J.G.N. Moraes, Tamara Gull, Aaron C. Ericsson, et al.
Research Square (Research Square) (2024)
Open Access | Times Cited: 6
Gut microbiota mediate vascular dysfunction in a murine model of sleep apnoea: effect of probiotics
Mohammad Badran, Abdelnaby Khalyfa, Aaron C. Ericsson, et al.
European Respiratory Journal (2022) Vol. 61, Iss. 1, pp. 2200002-2200002
Open Access | Times Cited: 27
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles
Cristina Bez, Alexander Martin Geller, Asaf Levy, et al.
mSystems (2023) Vol. 8, Iss. 2
Open Access | Times Cited: 16
Diverse electron carriers drive syntrophic interactions in an enriched anaerobic acetate-oxidizing consortium
Elizabeth McDaniel, Matthew J. Scarborough, Daniel Mulat, et al.
The ISME Journal (2023) Vol. 17, Iss. 12, pp. 2326-2339
Open Access | Times Cited: 15
The Local Tumor Microbiome Is Associated with Survival in Late-Stage Colorectal Cancer Patients
Justine W. Debelius, Lars Engstrand, Andreas Matussek, et al.
Microbiology Spectrum (2023) Vol. 11, Iss. 3
Open Access | Times Cited: 13
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
George Armstrong, Kalen Cantrell, Shi Huang, et al.
Genome Research (2021) Vol. 31, Iss. 11, pp. 2131-2137
Open Access | Times Cited: 28
Untargeted Metabolomics Sheds Light on the Diversity of Major Classes of Secondary Metabolites in the Malpighiaceae Botanical Family
Helena Mannochio-Russo, Rafael Felipe de Almeida, Wilhan Donizete Gonçalves Nunes, et al.
Frontiers in Plant Science (2022) Vol. 13
Open Access | Times Cited: 19
Partner fidelity, not geography, drives co-diversification of gut microbiota with hominids
Andrew H. Moeller
Biology Letters (2025) Vol. 21, Iss. 1
Open Access
The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns
Rodolfo A. Salido, Haoqi Zhao, Daniel McDonald, et al.
Cell (2025)
Open Access
Anthropogenic reverberations on the gut microbiome of dwarf chameleons (Bradypodion)
Matthew G. Adair, Krystal A. Tolley, Bettine Jansen van Vuuren, et al.
PeerJ (2025) Vol. 13, pp. e18811-e18811
Open Access
Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy
Natalia V. Zakharevich, Maxim D. Morozov, Vera A. Kanaeva, et al.
Life Science Alliance (2024) Vol. 7, Iss. 5, pp. e202302480-e202302480
Open Access | Times Cited: 3
OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures
Qiyun Zhu, Shi Huang, Antonio G. González, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 20
Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project
Rebecca Fielding‐Miller, Smruthi Karthikeyan, Tommi Gaines, et al.
medRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 20
Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake
Luke Thompson, Sean R. Anderson, Paul A. Den Uyl, et al.
GigaScience (2022) Vol. 11
Open Access | Times Cited: 14
Robustness of Mammalian Gut Microbiota to Humanization in Captivity
Brian K. Trevelline, Andrew H. Moeller
Frontiers in Ecology and Evolution (2022) Vol. 9
Open Access | Times Cited: 13
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype
Cameron Martino, Daniel McDonald, Kalen Cantrell, et al.
mSystems (2022) Vol. 7, Iss. 3
Open Access | Times Cited: 12
Axillary Microbiota Is Associated with Cognitive Impairment in Parkinson’s Disease Patients
Muzaffer Arıkan, Zeynep Yıldız, Tuğçe Kahraman Demir, et al.
Microbiology Spectrum (2022) Vol. 10, Iss. 1
Open Access | Times Cited: 10
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