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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

ideal: an R/Bioconductor package for interactive differential expression analysis
Fédérico Marini, Jan Linke, Harald Binder
BMC Bioinformatics (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 39

Showing 1-25 of 39 citing articles:

Bacterial polyphosphates interfere with the innate host defense to infection
Julian Roewe, Georgios Stavrides, Marcel Strueve, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 85
Interleukin-1 promotes autoimmune neuroinflammation by suppressing endothelial heme oxygenase-1 at the blood–brain barrier
Judith Hauptmann, Lisa Johann, Fédérico Marini, et al.
Acta Neuropathologica (2020) Vol. 140, Iss. 4, pp. 549-567
Open Access | Times Cited: 65
ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data
Stephany Orjuela, Ruizhu Huang, Katharina Hembach, et al.
G3 Genes Genomes Genetics (2019) Vol. 9, Iss. 7, pp. 2089-2096
Open Access | Times Cited: 58
RNAlysis: analyze your RNA sequencing data without writing a single line of code
Guy Teichman, Dror Cohen, Or Ganon, et al.
BMC Biology (2023) Vol. 21, Iss. 1
Open Access | Times Cited: 19
recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor
Leonardo Collado‐Torres, Abhinav Nellore, Andrew E. Jaffe
F1000Research (2017) Vol. 6, pp. 1558-1558
Open Access | Times Cited: 54
Assessing male reproductive toxicity of environmental pollutant di-ethylhexyl phthalate with network toxicology and molecular docking strategy
Yanggang Hong, Yi Wang, Deqi Wang, et al.
Reproductive Toxicology (2024) Vol. 130, pp. 108749-108749
Closed Access | Times Cited: 6
Serum microRNA Profiles and Pathways in Hepatitis B-Associated Hepatocellular Carcinoma: A South African Study
Kurt Sartorius, Benn Sartorius, Cheryl A. Winkler, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 2, pp. 975-975
Open Access | Times Cited: 5
GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data
Fédérico Marini, Annekathrin Ludt, Jan Linke, et al.
BMC Bioinformatics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 32
Revisiting hematopoiesis: applications of the bulk and single-cell transcriptomics dissecting transcriptional heterogeneity in hematopoietic stem cells
Isha Monga, Karambir Kaur, Sandeep Kumar Dhanda
Briefings in Functional Genomics (2022) Vol. 21, Iss. 3, pp. 159-176
Closed Access | Times Cited: 21
Integrative bioinformatics analysis to identify ferroptosis-related genes in non-obstructive azoospermia
Yanggang Hong, Qichao Yuan, Lingfei Wang, et al.
Journal of Assisted Reproduction and Genetics (2024) Vol. 41, Iss. 8, pp. 2145-2161
Closed Access | Times Cited: 4
TREND-DB—a transcriptome-wide atlas of the dynamic landscape of alternative polyadenylation
Fédérico Marini, Denise Scherzinger, Sven Danckwardt
Nucleic Acids Research (2020) Vol. 49, Iss. D1, pp. D243-D253
Open Access | Times Cited: 28
Interactive and Reproducible Workflows for Exploring and Modeling RNA‐seq Data with pcaExplorer, Ideal, and GeneTonic
Annekathrin Ludt, Arsenij Ustjanzew, Harald Binder, et al.
Current Protocols (2022) Vol. 2, Iss. 4
Open Access | Times Cited: 19
The ecological role of Fraxinus for species diversity in floodplain forests
Andreas Floren, Peter Horchler, Peter Sprick, et al.
Oecologia (2025) Vol. 207, Iss. 3
Open Access
Higher accumulation of mitragynine in Mitragyna speciosa (kratom) leaves affected by insect attack
Nisa Leksungnoen, Tushar Andriyas, Rossarin Tansawat, et al.
PLoS ONE (2025) Vol. 20, Iss. 4, pp. e0320941-e0320941
Open Access
RNfuzzyApp: an R shiny RNA-seq data analysis app for visualisation, differential expression analysis, time-series clustering and enrichment analysis
Margaux Haering, Bianca Habermann
F1000Research (2021) Vol. 10, pp. 654-654
Open Access | Times Cited: 16
Impact of high platelet turnover on the platelet transcriptome: Results from platelet RNA-sequencing in patients with sepsis
Thomas Nührenberg, Jasmin Stöckle, Fédérico Marini, et al.
PLoS ONE (2022) Vol. 17, Iss. 1, pp. e0260222-e0260222
Open Access | Times Cited: 9
ARAF suppresses ERBB3 expression and metastasis in a subset of lung cancers
Juliane Mooz, Kristina Riegel, Hari PS, et al.
Science Advances (2022) Vol. 8, Iss. 11
Open Access | Times Cited: 9
Bacillus velezensis WB induces systemic resistance in watermelon against Fusarium wilt
Zhongnan Chen, Zhigang Wang, Weihui Xu
Pest Management Science (2023) Vol. 80, Iss. 3, pp. 1423-1434
Closed Access | Times Cited: 5
Rifaximin stimulates nitrogen detoxification by PXR‐independent mechanisms in human small intestinal organoids
Koos de Wit, Ulrich Beuers, Anna Mukha, et al.
Liver International (2022) Vol. 43, Iss. 3, pp. 649-659
Open Access | Times Cited: 8
MultiRNAflow: integrated analysis of temporal RNA-seq data with multiple biological conditions
Rodolphe Loubaton, Nicolas Champagnat, Pierre Vallois, et al.
Bioinformatics (2024) Vol. 40, Iss. 5
Open Access | Times Cited: 1
freeCount: A Coding Free Framework for Guided Count Data Visualization and Analysis
Elizabeth Mae Brooks, Sheri Sanders, Michael E. Pfrender
(2024), pp. 1-4
Closed Access | Times Cited: 1
Quickomics: exploring omics data in an intuitive, interactive and informative manner
Benbo Gao, Jing Zhu, Soumya Negi, et al.
Bioinformatics (2021) Vol. 37, Iss. 20, pp. 3670-3672
Open Access | Times Cited: 8
CRISPR-Cas9-mediated somatic correction of a one-base deletion in the Ugt1a gene ameliorates hyperbilirubinemia in Crigler-Najjar syndrome mice
Giulia Bortolussi, Alessandra Iaconcig, Giulia Canarutto, et al.
Molecular Therapy — Methods & Clinical Development (2023) Vol. 31, pp. 101161-101161
Open Access | Times Cited: 3
Characterization of triple negative breast cancer gene expression profiles in Mexican patients
Eric Ortiz Valdez, Claudia Rangel‐Escareño, Juan Antonio Matus Santos, et al.
Molecular and Clinical Oncology (2022) Vol. 18, Iss. 1
Open Access | Times Cited: 5
Dashboard-style interactive plots for RNA-seq analysis are R Markdown ready with Glimma 2.0
Hasaru Kariyawasam, Shian Su, Oliver Voogd, et al.
NAR Genomics and Bioinformatics (2021) Vol. 3, Iss. 4
Open Access | Times Cited: 6
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