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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms
Nicolas Scalzitti, Anne Jeannin‐Girardon, Pierre Collet, et al.
BMC Genomics (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 79

Showing 1-25 of 79 citing articles:

Next-generation genome annotation: we still struggle to get it right
Steven L. Salzberg
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 292
Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
Hila Sberro, Brayon J. Fremin, Soumaya Zlitni, et al.
Cell (2019) Vol. 178, Iss. 5, pp. 1245-1259.e14
Open Access | Times Cited: 212
Protein-to-genome alignment with miniprot
Heng Li
Bioinformatics (2023) Vol. 39, Iss. 1
Open Access | Times Cited: 188
BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA
Lars Gabriel, Tomáš Brůna, Katharina J. Hoff, et al.
Genome Research (2024) Vol. 34, Iss. 5, pp. 769-777
Open Access | Times Cited: 112
Genome assembly in the telomere-to-telomere era
Heng Li, Richard Durbin
Nature Reviews Genetics (2024) Vol. 25, Iss. 9, pp. 658-670
Closed Access | Times Cited: 65
GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes
Tomáš Brůna, Alexandre Lomsadze, Mark Borodovsky
Genome Research (2024) Vol. 34, Iss. 5, pp. 757-768
Open Access | Times Cited: 24
zol and fai: large-scale targeted detection and evolutionary investigation of gene clusters
Rauf Salamzade, Patricia Q. Tran, Cody Martin, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 3
Open Access | Times Cited: 2
Construction of a chromosome‐level genome and variation map for the Pacific oyster Crassostrea gigas
Haigang Qi, Li Li, Guofan Zhang
Molecular Ecology Resources (2021) Vol. 21, Iss. 5, pp. 1670-1685
Closed Access | Times Cited: 68
A new gene finding tool GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes
Tomáš Brůna, Alexandre Lomsadze, Mark Borodovsky
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 32
Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus
Sarwar Azam, Abhisek Sahu, Naveen Kumar Pandey, et al.
Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 1
Spliceator: multi-species splice site prediction using convolutional neural networks
Nicolas Scalzitti, Arnaud Kress, Romain Orhand, et al.
BMC Bioinformatics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 49
Scaling up for success: from bioactive natural products to new medicines
Maximilian J. Helf, Kathrin Buntin, Andrej Klančar, et al.
Natural Product Reports (2024)
Closed Access | Times Cited: 8
Foster thy young: enhanced prediction of orphan genes in assembled genomes
Jing Li, Urminder Singh, Priyanka Bhandary, et al.
Nucleic Acids Research (2021) Vol. 50, Iss. 7, pp. e37-e37
Open Access | Times Cited: 29
Getting Ready for Large-Scale Proteomics in Crop Plants
Sarah Brajkovic, Nils Rugen, Carlos Agius, et al.
Nutrients (2023) Vol. 15, Iss. 3, pp. 783-783
Open Access | Times Cited: 11
Vaccine development using artificial intelligence and machine learning: A review
Varun Asediya, Pranav Anjaria, R. A. Mathakiya, et al.
International Journal of Biological Macromolecules (2024), pp. 136643-136643
Closed Access | Times Cited: 4
Functional annotation of eukaryotic genes from sedimentary ancient DNA
Uğur Çabuk, Ulrike Herzschuh, Lars Harms, et al.
Frontiers in Ecology and Evolution (2025) Vol. 13
Open Access
Transcriptomics in the era of long-read sequencing
Carolina Monzó, Tianyuan Liu, Ana Conesa
Nature Reviews Genetics (2025)
Closed Access
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut
Matthias Schmitz, Nicholas J. Dimonaco, Thomas Clavel, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Genomic and Transcriptomic Analysis to Explore the Biological Characteristics of Cyclocybe chaxingu
Qiang Yang, Haiyan Song, Ge Su, et al.
Horticulturae (2025) Vol. 11, Iss. 4, pp. 409-409
Open Access
Comparative gene annotation of 304 species of Drosophilidae
P. K. Dhakad, Bernard Kim, Dmitri A. Petrov, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
How to overcome constraints imposed by microsporidian genome features to ensure gene prediction?
Éric Peyretaillade, Reginald Florian Akossi, Jérémy Tournayre, et al.
Journal of Eukaryotic Microbiology (2024) Vol. 71, Iss. 5
Closed Access | Times Cited: 3
A genomic database furnishes minimal functional glycyl-tRNA synthetases homologous to other, designed class II urzymes
Sourav Kumar Patra, Jordan Douglas, Peter R. Wills, et al.
Nucleic Acids Research (2024) Vol. 52, Iss. 21, pp. 13305-13324
Open Access | Times Cited: 3
Evaluation of strategies for evidence-driven genome annotation using long-read RNA-seq
Alejandro Paniagua, Cristina Agustin-García, Francisco J. Pardo-Palacios, et al.
Genome Research (2024), pp. gr.279864.124-gr.279864.124
Closed Access | Times Cited: 3
Improved gene annotation of the fungal wheat pathogenZymoseptoria triticibased on combined Iso-Seq and RNA-Seq evidence
Nicolas Lapalu, Lucie Lamothe, Yohann Petit, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 9
Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes
Corentin Meyer, Nicolas Scalzitti, Anne Jeannin‐Girardon, et al.
BMC Bioinformatics (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 22
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