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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery
Yury A. Barbitoff, Ruslan Abasov, Varvara E. Tvorogova, et al.
BMC Genomics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 57

Showing 1-25 of 57 citing articles:

Deep learning in cancer genomics and histopathology
Michaela Unger, Jakob Nikolas Kather
Genome Medicine (2024) Vol. 16, Iss. 1
Open Access | Times Cited: 24
Diversity of ribosomes at the level of rRNA variation associated with human health and disease
Daphna Rothschild, Teodorus Theo Susanto, Xin Sui, et al.
Cell Genomics (2024) Vol. 4, Iss. 9, pp. 100629-100629
Open Access | Times Cited: 16
Multicentric pilot study to standardize clinical whole exome sequencing (WES) for cancer patients
Michael Menzel, Stephan Ossowski, Sebastian Kral, et al.
npj Precision Oncology (2023) Vol. 7, Iss. 1
Open Access | Times Cited: 19
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Edward S. Rice, Antton Alberdi, James M. Alfieri, et al.
BMC Biology (2023) Vol. 21, Iss. 1
Open Access | Times Cited: 18
Bioinformatics of germline variant discovery for rare disease diagnostics: current approaches and remaining challenges
Yury A. Barbitoff, Mikhail O. Ushakov, Tatyana E. Lazareva, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 7
Comparative evaluation of SNVs, indels, and structural variations detected with short- and long-read sequencing data
Shunichi Kosugi, Chikashi Terao
Human Genome Variation (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 7
Current perspectives on mass spectrometry-based immunopeptidomics: the computational angle to tumor antigen discovery
Bing Zhang, Michal Bassani‐Sternberg
Journal for ImmunoTherapy of Cancer (2023) Vol. 11, Iss. 10, pp. e007073-e007073
Open Access | Times Cited: 14
Efficient correction of ABCA4 variants by CRISPR-Cas9 in hiPSCs derived from Stargardt disease patients
Laura Siles, Sheila Ruiz‐Nogales, Arnau Navinés‐Ferrer, et al.
Molecular Therapy — Nucleic Acids (2023) Vol. 32, pp. 64-79
Open Access | Times Cited: 12
Clinical Genetics and Genomics for the Immunologist
Maxwell Bannister, Xiao Peng
Immunology and Allergy Clinics of North America (2025)
Closed Access
Benchmarking of variant calling software for whole-exome sequencing using gold standard datasets
Matthew Wong, b. Mohd Nor Liew, Melissa Hum, et al.
Scientific Reports (2025) Vol. 15, Iss. 1
Open Access
Artificial intelligence in variant calling: a review
Omar Abdelwahab, Davoud Torkamaneh
Frontiers in Bioinformatics (2025) Vol. 5
Open Access
Leveraging long-read sequencing technologies for pharmacogenomic testing: applications, analytical strategies, challenges, and future perspectives
Alireza Tafazoli, Mahboobeh Hemmati, Mahboobeh Rafigh, et al.
Frontiers in Genetics (2025) Vol. 16
Open Access
Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping
Le Thi Kim Dung, Lam Tung Le, Trang Hong Nguyen, et al.
Genes (2025) Vol. 16, Iss. 5, pp. 536-536
Open Access
Performance analysis of conventional and AI-based variant callers using short and long reads
Omar Abdelwahab, François Belzile, Davoud Torkamaneh
BMC Bioinformatics (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 10
Diversity of ribosomes at the level of rRNA variation associated with human health and disease
Daphna Rothschild, Teodorus Theo Susanto, Xin Sui, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 9
Incidental pathogenic germline alterations detected through liquid biopsy in patients with solid tumors: prevalence, clinical utility and implications
Juan Carlos Laguna, B. Pastor, I. Nalda, et al.
British Journal of Cancer (2024) Vol. 130, Iss. 9, pp. 1420-1431
Closed Access | Times Cited: 3
Strain-level identification of bacteria persisting in food and in food processing facilities: When do two isolates represent the same strain and which tools identify a strain?
Vi D. Pham, David J. Simpson, Michael G. Gänzle
Current Opinion in Food Science (2024), pp. 101245-101245
Open Access | Times Cited: 3
Comparative analysis of commonly used bioinformatics software based on omics
Mengwei Xu, Cheng Lin Xu, Mengzhu Chen, et al.
Gene Reports (2023) Vol. 32, pp. 101800-101800
Closed Access | Times Cited: 9
VariantDetective: an accurate all-in-one pipeline for detecting consensus bacterial SNPs and SVs
Philippe Charron, Mingsong Kang
Bioinformatics (2024) Vol. 40, Iss. 2
Open Access | Times Cited: 2
Assessing the impact of sequencing platforms and analytical pipelines on whole-exome sequencing
Yanping Sun, Xiaochao Zhao, Xue Fan, et al.
Frontiers in Genetics (2024) Vol. 15
Open Access | Times Cited: 2
Investigating the performance of Oxford Nanopore long-read sequencing with respect to Illumina microarrays and short-read sequencing
Renato Santos, Hyun Ah Lee, Alexander Williams, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Performance evaluation of six popular short-read simulators
Mark Milhaven, Susanne P. Pfeifer
Heredity (2022) Vol. 130, Iss. 2, pp. 55-63
Open Access | Times Cited: 11
Evaluation of the Available Variant Calling Tools for Oxford Nanopore Sequencing in Breast Cancer
Asmaa A. Helal, Bishoy T. Saad, Mina T. Saad, et al.
Genes (2022) Vol. 13, Iss. 9, pp. 1583-1583
Open Access | Times Cited: 10
Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies
Johan Rollin, Rachelle Bester, Yves Brostaux, et al.
PeerJ (2023) Vol. 11, pp. e15816-e15816
Open Access | Times Cited: 5
Evaluating the performance of low-frequency variant calling tools for the detection of variants from short-read deep sequencing data
Xudong Xiang, Bowen Lu, Dongyang Song, et al.
Scientific Reports (2023) Vol. 13, Iss. 1
Open Access | Times Cited: 5
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