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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Predicting the hosts of prokaryotic viruses using GCN-based semi-supervised learning
Jiayu Shang, Yanni Sun
BMC Biology (2021) Vol. 19, Iss. 1
Open Access | Times Cited: 35

Showing 1-25 of 35 citing articles:

PhaTYP: predicting the lifestyle for bacteriophages using BERT
Jiayu Shang, Xubo Tang, Yanni Sun
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Open Access | Times Cited: 112
PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data
Jiayu Shang, Cheng Peng, Herui Liao, et al.
Bioinformatics Advances (2023) Vol. 3, Iss. 1
Open Access | Times Cited: 45
Antimicrobial resistance crisis: could artificial intelligence be the solution?
Guangyu Liu, Dan Yu, Mei-Mei Fan, et al.
Military Medical Research (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 43
Machine learning for data integration in human gut microbiome
Peishun Li, Hao Luo, Boyang Ji, et al.
Microbial Cell Factories (2022) Vol. 21, Iss. 1
Open Access | Times Cited: 63
Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence
Xiaoyan Liu, Yi Liu, Junlin Liu, et al.
Neural Regeneration Research (2023) Vol. 19, Iss. 4, pp. 833-845
Open Access | Times Cited: 31
A compendium of ruminant gastrointestinal phage genomes revealed a higher proportion of lytic phages than in any other environments
Yingjian Wu, Na Gao, Chuqing Sun, et al.
Microbiome (2024) Vol. 12, Iss. 1
Open Access | Times Cited: 9
Regional antimicrobial resistance gene flow among the One Health sectors in China
Yuqing Feng, Xin Lu, Jiayong Zhao, et al.
Microbiome (2025) Vol. 13, Iss. 1
Open Access | Times Cited: 1
Revisiting therapeutic options against Resistant Klebsiella Pneumoniae infection: phage therapy is key
Jiabao Xing, Rong-jia Han, Jinxin Zhao, et al.
Microbiological Research (2025), pp. 128083-128083
Closed Access | Times Cited: 1
Accurate identification of bacteriophages from metagenomic data using Transformer
Jiayu Shang, Xubo Tang, Ruocheng Guo, et al.
Briefings in Bioinformatics (2022) Vol. 23, Iss. 4
Open Access | Times Cited: 34
Advances in phage–host interaction prediction: in silico method enhances the development of phage therapies
Wanchun Nie, Tianyi Qiu, Yiwen Wei, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 8
Engineering Phages to Fight Multidrug-Resistant Bacteria
Huan Peng, Irene A. Chen, Udi Qimron
Chemical Reviews (2024)
Open Access | Times Cited: 8
Recent advances in phage defense systems and potential overcoming strategies
Xiaoming Yuan, Zhichao Huang, Zhenjun Zhu, et al.
Biotechnology Advances (2023) Vol. 65, pp. 108152-108152
Closed Access | Times Cited: 14
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer
Jiayu Shang, Cheng Peng, Xubo Tang, et al.
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i30-i39
Open Access | Times Cited: 12
Biological and bioinformatic tools for the discovery of unknown phage–host combinations
Jennifer Mahony
Current Opinion in Microbiology (2024) Vol. 77, pp. 102426-102426
Open Access | Times Cited: 4
A Systematic Survey of Graph Convolutional Networks for Artificial Intelligence Applications
Amutha Sadasivan, Kavipriya Gananathan, Joe Dhanith Pal Nesamony Rose Mary, et al.
Wiley Interdisciplinary Reviews Data Mining and Knowledge Discovery (2025) Vol. 15, Iss. 2
Closed Access
Exploring deep learning in phage discovery and characterization
Malena Regina De Freitas E SILVA, Vitória Yumi Uetuki Nicoleti, Bárbara Rodrigues, et al.
Virology (2025) Vol. 609, pp. 110559-110559
Closed Access
GMAMDA: Predicting Metabolite–Disease Associations Based on Adaptive Hardness Negative Sampling and Adaptive Graph Multiple Convolution
Bo Hu, Ying Su, Xuecong Tian, et al.
Journal of Chemical Information and Modeling (2025)
Closed Access
Viromic and Metagenomic Analyses of Commercial Spirulina Fermentations Reveal Remarkable Microbial Diversity
Brian McDonnell, Elvina Parlindungan, Erika Vasiliauskaite, et al.
Viruses (2024) Vol. 16, Iss. 7, pp. 1039-1039
Open Access | Times Cited: 2
Advances in the field of phage-based therapy with special emphasis on computational resources
Nisha Bajiya, Anjali Dhall, Suchet Aggarwal, et al.
Briefings in Bioinformatics (2022) Vol. 24, Iss. 1
Closed Access | Times Cited: 9
Protein embeddings improve phage-host interaction prediction
Mark Edward M. Gonzales, Jennifer C. Ureta, Anish Man Singh Shrestha
PLoS ONE (2023) Vol. 18, Iss. 7, pp. e0289030-e0289030
Open Access | Times Cited: 4
Genomic Analysis and Taxonomic Characterization of Seven Bacteriophage Genomes Metagenomic-Assembled from the Dishui Lake
H. Cai, Yifan Zhou, Xiefei Li, et al.
Viruses (2023) Vol. 15, Iss. 10, pp. 2038-2038
Open Access | Times Cited: 4
Identification and classification of the genomes of novel microviruses in poultry slaughterhouse
Ke‐Ming Xie, Ben-Fu Lin, Xinyu Sun, et al.
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 1
Multi-view attention graph convolutional networks for the host prediction of phages
Lijia Ma, Peng Gao, Wenxiang Zhou, et al.
Knowledge-Based Systems (2024), pp. 112755-112755
Closed Access | Times Cited: 1
Phage–bacterial contig association prediction with a convolutional neural network
Tianqi Tang, Shengwei Hou, Jed A. Fuhrman, et al.
Bioinformatics (2022) Vol. 38, Iss. Supplement_1, pp. i45-i52
Open Access | Times Cited: 6
Exploring the Archaeal Virosphere by Metagenomics
Yifan Zhou, Yongjie Wang, David Prangishvili, et al.
Methods in molecular biology (2023), pp. 1-22
Closed Access | Times Cited: 1
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