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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions
Alireza Fotuhi Siahpirani, Ferhat Ay, Sushmita Roy
Genome biology (2016) Vol. 17, Iss. 1
Open Access | Times Cited: 32

Showing 1-25 of 32 citing articles:

Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data
Haitham Ashoor, Xiaowen Chen, Wojciech Rosikiewicz, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 60
Identification of FMR1-regulated molecular networks in human neurodevelopment
Meng Li, Junha Shin, Ryan D. Risgaard, et al.
Genome Research (2020) Vol. 30, Iss. 3, pp. 361-374
Open Access | Times Cited: 60
Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields
Andrews Akwasi Agbleke, Assaf Amitai, Jason D. Buenrostro, et al.
Molecular Cell (2020) Vol. 79, Iss. 6, pp. 881-901
Open Access | Times Cited: 57
SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering
Kellen G. Cresswell, John C. Stansfield, Mikhail G. Dozmorov
BMC Bioinformatics (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 40
MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions
Koon‐Kiu Yan, Shaoke Lou, Mark Gerstein
PLoS Computational Biology (2017) Vol. 13, Iss. 7, pp. e1005647-e1005647
Open Access | Times Cited: 46
GRiNCH: simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization
Da-Inn Lee, Sushmita Roy
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 24
Proposing a novel community detection approach to identify cointeracting genomic regions
Mohammadjavad Hosseinpoor, Hamïd Parvïn, Samad Nejatian, et al.
Mathematical Biosciences & Engineering (2020) Vol. 17, Iss. 3, pp. 2193-2217
Open Access | Times Cited: 20
Inference of cell type specific regulatory networks on mammalian lineages
Deborah Chasman, Sushmita Roy
Current Opinion in Systems Biology (2017) Vol. 2, pp. 130-139
Open Access | Times Cited: 21
Majority Voting Based Multi-Task Clustering of Air Quality Monitoring Network in Turkey
Göksu Tüysüzoğlu, Derya Birant, Ayşegül Pala
Applied Sciences (2019) Vol. 9, Iss. 8, pp. 1610-1610
Open Access | Times Cited: 19
Salicylic Acid Alleviated Salt Damage of Populus euphratica: A Physiological and Transcriptomic Analysis
Shupei Rao, Chao Du, Aijia Li, et al.
Forests (2019) Vol. 10, Iss. 5, pp. 423-423
Open Access | Times Cited: 16
GILoop: Robust chromatin loop calling across multiple sequencing depths on Hi-C data
Fuzhou Wang, Tingxiao Gao, Jiecong Lin, et al.
iScience (2022) Vol. 25, Iss. 12, pp. 105535-105535
Open Access | Times Cited: 8
Modeling three-dimensional genomic organization in evolution and pathogenesis
Alon Diament, Tamir Tuller
Seminars in Cell and Developmental Biology (2018) Vol. 90, pp. 78-93
Closed Access | Times Cited: 12
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
Denise Thiel, Nataša Djurdjevac Conrad, Evgenia Ntini, et al.
BMC Bioinformatics (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 12
Esearch3D: propagating gene expression in chromatin networks to illuminate active enhancers
Maninder Heer, Luca Giudice, Claudia Mengoni, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 10, pp. e55-e55
Open Access | Times Cited: 4
Unsupervised Multi-task Learning with Hierarchical Data Structure
Wenming Cao, Sheng Qian, Si Wu, et al.
Pattern Recognition (2018) Vol. 86, pp. 248-264
Closed Access | Times Cited: 11
A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies
Junha Shin, Harald Marx, Alicia Richards, et al.
Nucleic Acids Research (2020) Vol. 49, Iss. 1, pp. e3-e3
Open Access | Times Cited: 10
Network-Based Methods and Other Approaches for Predicting lncRNA Functions and Disease Associations
Rosario M. Piro, Annalisa Marsico
Methods in molecular biology (2019), pp. 301-321
Closed Access | Times Cited: 8
Topological structure analysis of chromatin interaction networks
Juris Víksna, Gatis Melkus, Edgars Celms, et al.
BMC Bioinformatics (2019) Vol. 20, Iss. S23
Open Access | Times Cited: 6
Sequence-based multiscale modeling for high-throughput chromosome conformation capture (Hi-C) data analysis
Kelin Xia
PLoS ONE (2018) Vol. 13, Iss. 2, pp. e0191899-e0191899
Open Access | Times Cited: 5
Simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization
Da-Inn Lee, Sushmita Roy
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 5
SpectralTAD: an R package for defining a hierarchy of Topologically Associated Domains using spectral clustering
Kellen G. Cresswell, John C. Stansfield, Mikhail G. Dozmorov
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 4
BHi-Cect: a top-down algorithm for identifying the multi-scale hierarchical structure of chromosomes
Vipin Kumar, Simon Leclerc, Yuichi Taniguchi
Nucleic Acids Research (2020) Vol. 48, Iss. 5, pp. e26-e26
Open Access | Times Cited: 4
MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions
Koon‐Kiu Yan, Shaoke Lou, Mark Gerstein
bioRxiv (Cold Spring Harbor Laboratory) (2016)
Open Access | Times Cited: 2
Examining dynamics of three-dimensional genome organization with multi-task matrix factorization
Da-Inn Lee, Sushmita Roy
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Graph-regularized matrix factorization for reliable detection of topological units from high-throughput chromosome conformation capture datasets
Da-Inn Lee, Sushmita Roy
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 2
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