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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

SCALE: modeling allele-specific gene expression by single-cell RNA sequencing
Yuchao Jiang, Nancy Zhang, Mingyao Li
Genome biology (2017) Vol. 18, Iss. 1
Open Access | Times Cited: 103

Showing 1-25 of 103 citing articles:

Single-Cell RNA-Seq Technologies and Related Computational Data Analysis
Geng Chen, Baitang Ning, Tieliu Shi
Frontiers in Genetics (2019) Vol. 10
Open Access | Times Cited: 827
Genomic encoding of transcriptional burst kinetics
Anton J. M. Larsson, Per Johnsson, Michael Hagemann-Jensen, et al.
Nature (2018) Vol. 565, Iss. 7738, pp. 251-254
Open Access | Times Cited: 499
Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
Luke Zappia, Belinda Phipson, Alicia Oshlack
PLoS Computational Biology (2018) Vol. 14, Iss. 6, pp. e1006245-e1006245
Open Access | Times Cited: 282
SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references
Meichen Dong, Aatish Thennavan, Eugene Urrutia, et al.
Briefings in Bioinformatics (2019) Vol. 22, Iss. 1, pp. 416-427
Open Access | Times Cited: 206
Single-cell genomics meets human genetics
Anna Cuomo, Aparna Nathan, Soumya Raychaudhuri, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 535-549
Closed Access | Times Cited: 73
Single-cell genomics and regulatory networks for 388 human brains
Prashant S. Emani, Jason Liu, Declan Clarke, et al.
Science (2024) Vol. 384, Iss. 6698
Open Access | Times Cited: 45
Gene expression distribution deconvolution in single-cell RNA sequencing
Jingshu Wang, Mo Huang, Eduardo A. Torre, et al.
Proceedings of the National Academy of Sciences (2018) Vol. 115, Iss. 28
Open Access | Times Cited: 116
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells
Hiroshi Ochiai, Tetsutaro Hayashi, Mana Umeda, et al.
Science Advances (2020) Vol. 6, Iss. 25
Open Access | Times Cited: 97
Transcriptional and imprinting complexity in Arabidopsis seeds at single-nucleus resolution
Colette L. Picard, Rebecca A. Povilus, Ben P. Williams, et al.
Nature Plants (2021) Vol. 7, Iss. 6, pp. 730-738
Open Access | Times Cited: 72
Genome-wide inference reveals that feedback regulations constrain promoter-dependent transcriptional burst kinetics
Songhao Luo, Zihao Wang, Zhenquan Zhang, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. 1, pp. 68-83
Open Access | Times Cited: 32
Opportunities and tradeoffs in single-cell transcriptomic technologies
Matilde Immacolata Conte, Azahara Fuentes‐Trillo, Cecilia Domínguez Conde
Trends in Genetics (2023) Vol. 40, Iss. 1, pp. 83-93
Open Access | Times Cited: 23
Modelling capture efficiency of single-cell RNA-sequencing data improves inference of transcriptome-wide burst kinetics
Wenhao Tang, Andreas Christ Sølvsten Jørgensen, Samuel Marguerat, et al.
Bioinformatics (2023) Vol. 39, Iss. 7
Open Access | Times Cited: 21
Inferring transcriptional bursting kinetics from single-cell snapshot data using a generalized telegraph model
Songhao Luo, Zhenquan Zhang, Zihao Wang, et al.
Royal Society Open Science (2023) Vol. 10, Iss. 4
Open Access | Times Cited: 20
DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
Zilu Zhou, Bihui Xu, Andy J. Minn, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 49
Statistical and Bioinformatics Analysis of Data from Bulk and Single-Cell RNA Sequencing Experiments
Xiaoqing Yu, Farnoosh Abbas‐Aghababazadeh, Y. Ann Chen, et al.
Methods in molecular biology (2020), pp. 143-175
Open Access | Times Cited: 43
Nonparametric single-cell multiomic characterization of trio relationships between transcription factors, target genes, and cis-regulatory regions
Yuchao Jiang, Yuriko Harigaya, Zhaojun Zhang, et al.
Cell Systems (2022) Vol. 13, Iss. 9, pp. 737-751.e4
Open Access | Times Cited: 27
Inferring gene regulation from stochastic transcriptional variation across single cells at steady state
Anika Gupta, Jorge D. Martin-Rufino, Thouis R. Jones, et al.
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 34
Open Access | Times Cited: 24
Causal inference in drug discovery and development
Tom Michoel, Jitao David Zhang
Drug Discovery Today (2023) Vol. 28, Iss. 10, pp. 103737-103737
Open Access | Times Cited: 16
Transcriptional bursts explain autosomal random monoallelic expression and affect allelic imbalance
Anton J. M. Larsson, Christoph Ziegenhain, Michael Hagemann-Jensen, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 3, pp. e1008772-e1008772
Open Access | Times Cited: 31
A generalized moment-based method for estimating parameters of stochastic gene transcription
Liang Chen, Chunjuan Zhu, Feng Jiao
Mathematical Biosciences (2022) Vol. 345, pp. 108780-108780
Closed Access | Times Cited: 21
Allele-specific DNA methylation and gene expression during shoot organogenesis in tissue culture of hybrid poplar
Ying Guo, Yangfan Feng, Ganggui Yang, et al.
Horticulture Research (2024) Vol. 11, Iss. 3
Open Access | Times Cited: 4
Detection of allele-specific expression in spatial transcriptomics with spASE
Luli S. Zou, Dylan Cable, Irving Barrera, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Gene Expression Distribution Deconvolution in Single Cell RNA Sequencing
Jingshu Wang, Mo Huang, Eduardo de la Torre, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2017)
Open Access | Times Cited: 36
Maximizing the Utility of Cancer Transcriptomic Data
Yu Xiang, Youqiong Ye, Zhao Zhang, et al.
Trends in cancer (2018) Vol. 4, Iss. 12, pp. 823-837
Closed Access | Times Cited: 36
Allele-specific RNA imaging shows that allelic imbalances can arise in tissues through transcriptional bursting
Orsolya Symmons, Marcello Chang, Ian A. Mellis, et al.
PLoS Genetics (2019) Vol. 15, Iss. 1, pp. e1007874-e1007874
Open Access | Times Cited: 34
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