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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
Avi Srivastava, Laraib Malik, Tom Smith, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 241

Showing 1-25 of 241 citing articles:

Integrated analysis of multimodal single-cell data
Yuhan Hao, Stephanie Hao, Erica Andersen‐Nissen, et al.
Cell (2021) Vol. 184, Iss. 13, pp. 3573-3587.e29
Open Access | Times Cited: 10491
A scalable SCENIC workflow for single-cell gene regulatory network analysis
Bram Van de Sande, Christopher Flerin, Kristofer Davie, et al.
Nature Protocols (2020) Vol. 15, Iss. 7, pp. 2247-2276
Closed Access | Times Cited: 919
Orchestrating single-cell analysis with Bioconductor
Robert A. Amezquita, Aaron T. L. Lun, Étienne Becht, et al.
Nature Methods (2019) Vol. 17, Iss. 2, pp. 137-145
Open Access | Times Cited: 740
Decoding myofibroblast origins in human kidney fibrosis
Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, et al.
Nature (2020) Vol. 589, Iss. 7841, pp. 281-286
Open Access | Times Cited: 539
Expression Atlas update: from tissues to single cells
Irene Papatheodorou, Pablo Moreno, Jonathan Manning, et al.
Nucleic Acids Research (2019)
Open Access | Times Cited: 498
Reversing a model of Parkinson’s disease with in situ converted nigral neurons
Hao Qian, Xinjiang Kang, Jing Hu, et al.
Nature (2020) Vol. 582, Iss. 7813, pp. 550-556
Open Access | Times Cited: 412
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
Páll Melsted, A. Sina Booeshaghi, Lauren Liu, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 7, pp. 813-818
Open Access | Times Cited: 364
STARsolo: accurate, fast and versatile mapping/quantification of single-cell and single-nucleus RNA-seq data
Benjamin Kaminow, Dinar Yunusov, Alexander Dobin
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 308
Tximeta: Reference sequence checksums for provenance identification in RNA-seq
Michael I. Love, Charlotte Soneson, Peter F. Hickey, et al.
PLoS Computational Biology (2020) Vol. 16, Iss. 2, pp. e1007664-e1007664
Open Access | Times Cited: 251
A single-cell atlas of the normal and malformed human brain vasculature
Ethan A. Winkler, Chang N. Kim, Jayden M. Ross, et al.
Science (2022) Vol. 375, Iss. 6584
Open Access | Times Cited: 224
Applications of single-cell RNA sequencing in drug discovery and development
Bram Van de Sande, Joon Sang Lee, Euphemia Mutasa-Gottgens, et al.
Nature Reviews Drug Discovery (2023) Vol. 22, Iss. 6, pp. 496-520
Open Access | Times Cited: 207
Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq
Bo Li, Joshua Gould, Yiming Yang, et al.
Nature Methods (2020) Vol. 17, Iss. 8, pp. 793-798
Open Access | Times Cited: 203
recount3: summaries and queries for large-scale RNA-seq expression and splicing
Christopher Wilks, Shijie Zheng, Feng Yong Chen, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 190
Remediation of soil polluted with petroleum hydrocarbons and its reuse for agriculture: Recent progress, challenges, and perspectives
Teklit Gebregiorgis Ambaye, Alif Chebbi, Francesca Formicola, et al.
Chemosphere (2022) Vol. 293, pp. 133572-133572
Open Access | Times Cited: 126
Microfluidics-free single-cell genomics with templated emulsification
Iain C. Clark, Kristina M. Fontanez, Robert H. Meltzer, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 11, pp. 1557-1566
Open Access | Times Cited: 105
Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro
Bingjie Zhang, Avi Srivastava, Eleni P. Mimitou, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 8, pp. 1220-1230
Open Access | Times Cited: 79
Single-cell RNA sequencing provides a high-resolution roadmap for understanding the multicellular compartmentation of specialized metabolism
Sijie Sun, Xiaofeng Shen, Yi Li, et al.
Nature Plants (2022) Vol. 9, Iss. 1, pp. 179-190
Closed Access | Times Cited: 78
Computational Approaches and Challenges in Spatial Transcriptomics
Shuangsang Fang, Bichao Chen, Yong Zhang, et al.
Genomics Proteomics & Bioinformatics (2022) Vol. 21, Iss. 1, pp. 24-47
Open Access | Times Cited: 73
Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells
Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, et al.
Nature Methods (2023) Vol. 21, Iss. 1, pp. 50-59
Open Access | Times Cited: 50
Multimodal characterization of murine gastruloid development
Simon Suppinger, Marietta Zinner, Nadim Aizarani, et al.
Cell stem cell (2023) Vol. 30, Iss. 6, pp. 867-884.e11
Open Access | Times Cited: 45
Sex-biased gene expression across mammalian organ development and evolution
Leticia Rodríguez-Montes, Svetlana Ovchinnikova, Xuefei Yuan, et al.
Science (2023) Vol. 382, Iss. 6670
Open Access | Times Cited: 45
Cationic cholesterol-dependent LNP delivery to lung stem cells, the liver, and heart
Afsane Radmand, Hyejin Kim, Jared Beyersdorf, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 11
Open Access | Times Cited: 20
Systematic comparative analysis of single cell RNA-sequencing methods
Jiarui Ding, Xian Adiconis, Sean Simmons, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Open Access | Times Cited: 113
SoupX removes ambient RNA contamination from droplet based single-cell RNA sequencing data
Matthew D. Young, Sam Behjati
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 107
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