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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference
Yuanhua Huang, Davis J. McCarthy, Oliver Stegle
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 233

Showing 1-25 of 233 citing articles:

Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes
Haynes Heaton, Arthur M. Talman, Andrew Knights, et al.
Nature Methods (2020) Vol. 17, Iss. 6, pp. 615-620
Open Access | Times Cited: 371
Autism genes converge on asynchronous development of shared neuron classes
Bruna Paulsen, Silvia Velasco, Amanda J. Kedaigle, et al.
Nature (2022) Vol. 602, Iss. 7896, pp. 268-273
Open Access | Times Cited: 309
Modelling human blastocysts by reprogramming fibroblasts into iBlastoids
Xiaodong Liu, Jia Ping Tan, Jan Schröder, et al.
Nature (2021) Vol. 591, Iss. 7851, pp. 627-632
Closed Access | Times Cited: 286
A blood atlas of COVID-19 defines hallmarks of disease severity and specificity
David Ahern, Zhichao Ai, Mark Ainsworth, et al.
Cell (2022) Vol. 185, Iss. 5, pp. 916-938.e58
Open Access | Times Cited: 267
Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines
Eddie Cano-Gamez, Blagoje Soskic, Theodoros I. Roumeliotis, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 226
Autism spectrum disorder at the crossroad between genes and environment: contributions, convergences, and interactions in ASD developmental pathophysiology
Cristina Cheroni, Nicolò Caporale, Giuseppe Testa
Molecular Autism (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 196
Ultra-high-throughput single-cell RNA sequencing and perturbation screening with combinatorial fluidic indexing
Paul Datlinger, André F. Rendeiro, Thorina Boenke, et al.
Nature Methods (2021) Vol. 18, Iss. 6, pp. 635-642
Open Access | Times Cited: 195
propeller:testing for differences in cell type proportions in single cell data
Belinda Phipson, Choon Boon Sim, Enzo R. Porrello, et al.
Bioinformatics (2022) Vol. 38, Iss. 20, pp. 4720-4726
Open Access | Times Cited: 185
An immunodominant NP105–113-B*07:02 cytotoxic T cell response controls viral replication and is associated with less severe COVID-19 disease
Yanchun Peng, Suet Ling Felce, Danning Dong, et al.
Nature Immunology (2021) Vol. 23, Iss. 1, pp. 50-61
Open Access | Times Cited: 158
Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex
Ana Uzquiano, Amanda J. Kedaigle, Martina Pigoni, et al.
Cell (2022) Vol. 185, Iss. 20, pp. 3770-3788.e27
Open Access | Times Cited: 150
A reference human induced pluripotent stem cell line for large-scale collaborative studies
Caroline B. Pantazis, Andrian Yang, Erika Lara, et al.
Cell stem cell (2022) Vol. 29, Iss. 12, pp. 1685-1702.e22
Open Access | Times Cited: 141
Cellsnp-lite: an efficient tool for genotyping single cells
Xianjie Huang, Yuanhua Huang
Bioinformatics (2021) Vol. 37, Iss. 23, pp. 4569-4571
Open Access | Times Cited: 114
Immune disease risk variants regulate gene expression dynamics during CD4+ T cell activation
Blagoje Soskic, Eddie Cano-Gamez, Deborah J. Smyth, et al.
Nature Genetics (2022) Vol. 54, Iss. 6, pp. 817-826
Open Access | Times Cited: 111
Single-cell transcriptomic and spatial landscapes of the developing human pancreas
Oladapo E. Olaniru, Ulrich D. Kadolsky, Shichina Kannambath, et al.
Cell Metabolism (2022) Vol. 35, Iss. 1, pp. 184-199.e5
Open Access | Times Cited: 78
Distinct molecular profiles of skull bone marrow in health and neurological disorders
Zeynep Ilgin Kolabas, Louis B. Kuemmerle, Robert Perneczky, et al.
Cell (2023) Vol. 186, Iss. 17, pp. 3706-3725.e29
Open Access | Times Cited: 76
Single-cell genomics meets human genetics
Anna Cuomo, Aparna Nathan, Soumya Raychaudhuri, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 8, pp. 535-549
Closed Access | Times Cited: 75
Single nucleus multiomics identifies ZEB1 and MAFB as candidate regulators of Alzheimer’s disease-specific cis-regulatory elements
Ashlyn G. Anderson, Brianne B. Rogers, Jacob M. Loupe, et al.
Cell Genomics (2023) Vol. 3, Iss. 3, pp. 100263-100263
Open Access | Times Cited: 53
An atlas of cells in the human tonsil
Ramon Massoni-Badosa, Sergio Aguilar-Fernández, Juan C. Nieto, et al.
Immunity (2024) Vol. 57, Iss. 2, pp. 379-399.e18
Open Access | Times Cited: 50
Adipose tissue retains an epigenetic memory of obesity after weight loss
Laura C. Hinte, Daniel Castellano‐Castillo, Adhideb Ghosh, et al.
Nature (2024)
Open Access | Times Cited: 45
UNC93B1 variants underlie TLR7-dependent autoimmunity
Christine Wolf, Ee Lyn Lim, Mohammad Reza Mokhtari, et al.
Science Immunology (2024) Vol. 9, Iss. 92
Closed Access | Times Cited: 38
An integrated single-cell reference atlas of the human endometrium
Magda Marečková, Luz García‐Alonso, Marie Moullet, et al.
Nature Genetics (2024) Vol. 56, Iss. 9, pp. 1925-1937
Open Access | Times Cited: 37
A single-cell atlas enables mapping of homeostatic cellular shifts in the adult human breast
Austin D. Reed, Sara Pensa, Adi Steif, et al.
Nature Genetics (2024) Vol. 56, Iss. 4, pp. 652-662
Open Access | Times Cited: 33
Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods
Drew Neavin, Anne Senabouth, Himanshi Arora, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 23
Multiplexed single-cell transcriptional response profiling to define cancer vulnerabilities and therapeutic mechanism of action
James M. McFarland, Brenton R. Paolella, Allison Warren, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 139
AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data
Asa Thibodeau, Alper Eroğlu, Christopher S. McGinnis, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 71
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