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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Paragraph: a graph-based structural variant genotyper for short-read sequence data
Sai Chen, Peter Krusche, Egor Dolzhenko, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 148

Showing 1-25 of 148 citing articles:

High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios
Marta Byrska-Bishop, Uday S. Evani, Xuefang Zhao, et al.
Cell (2022) Vol. 185, Iss. 18, pp. 3426-3440.e19
Open Access | Times Cited: 645
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
Peter Ebert, Peter A. Audano, Qihui Zhu, et al.
Science (2021) Vol. 372, Iss. 6537
Open Access | Times Cited: 549
The Human Pangenome Project: a global resource to map genomic diversity
Ting Wang, Lucinda Antonacci-Fulton, Kerstin Howe, et al.
Nature (2022) Vol. 604, Iss. 7906, pp. 437-446
Open Access | Times Cited: 360
A robust benchmark for detection of germline large deletions and insertions
Justin M. Zook, Nancy F. Hansen, Nathan D. Olson, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 11, pp. 1347-1355
Open Access | Times Cited: 339
The design and construction of reference pangenome graphs with minigraph
Heng Li, Xiaowen Feng, Chong Chu
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 320
Graph pangenome captures missing heritability and empowers tomato breeding
Yao Zhou, Zhiyang Zhang, Zhigui Bao, et al.
Nature (2022) Vol. 606, Iss. 7914, pp. 527-534
Open Access | Times Cited: 281
Towards population-scale long-read sequencing
Wouter De Coster, Matthias H. Weissensteiner, Fritz J. Sedlazeck
Nature Reviews Genetics (2021) Vol. 22, Iss. 9, pp. 572-587
Open Access | Times Cited: 257
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
Jouni Sirén, Jean Monlong, Xian Chang, et al.
Science (2021) Vol. 374, Iss. 6574
Open Access | Times Cited: 241
Genotyping structural variants in pangenome graphs using the vg toolkit
Glenn Hickey, David N. Heller, Jean Monlong, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 223
Pangenome Graphs
Jordan M. Eizenga, Adam M. Novak, Jonas A. Sibbesen, et al.
Annual Review of Genomics and Human Genetics (2020) Vol. 21, Iss. 1, pp. 139-162
Open Access | Times Cited: 213
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes
Jana Ebler, Peter Ebert, Wayne E. Clarke, et al.
Nature Genetics (2022) Vol. 54, Iss. 4, pp. 518-525
Open Access | Times Cited: 165
GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs
Hannes P. Eggertsson, Snædís Kristmundsdóttir, Doruk Beyter, et al.
Nature Communications (2019) Vol. 10, Iss. 1
Open Access | Times Cited: 148
Recommendations for whole genome sequencing in diagnostics for rare diseases
Erika Souche, Sergi Beltrán, Erwin Brosens, et al.
European Journal of Human Genetics (2022) Vol. 30, Iss. 9, pp. 1017-1021
Open Access | Times Cited: 94
Variant calling and benchmarking in an era of complete human genome sequences
Nathan D. Olson, Justin Wagner, Nathan Dwarshuis, et al.
Nature Reviews Genetics (2023) Vol. 24, Iss. 7, pp. 464-483
Closed Access | Times Cited: 81
Jasmine and Iris: population-scale structural variant comparison and analysis
Melanie Kirsche, Gautam Prabhu, Rachel M. Sherman, et al.
Nature Methods (2023) Vol. 20, Iss. 3, pp. 408-417
Open Access | Times Cited: 75
A sheep pangenome reveals the spectrum of structural variations and their effects on tail phenotypes
Ran Li, Mian Gong, Xinmiao Zhang, et al.
Genome Research (2023) Vol. 33, Iss. 3, pp. 463-477
Open Access | Times Cited: 67
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
Joel Rozowsky, Jiahao Gao, Beatrice Borsari, et al.
Cell (2023) Vol. 186, Iss. 7, pp. 1493-1511.e40
Open Access | Times Cited: 54
Genome assembly and genetic dissection of a prominent drought-resistant maize germplasm
Tian Tian, Shuhui Wang, Shiping Yang, et al.
Nature Genetics (2023) Vol. 55, Iss. 3, pp. 496-506
Closed Access | Times Cited: 52
Structurally divergent and recurrently mutated regions of primate genomes
Yafei Mao, William T. Harvey, David Porubský, et al.
Cell (2024) Vol. 187, Iss. 6, pp. 1547-1562.e13
Open Access | Times Cited: 41
The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees
Tingting Shi, Xinxin Zhang, Yukang Hou, et al.
Molecular Plant (2024) Vol. 17, Iss. 5, pp. 725-746
Open Access | Times Cited: 26
Long-read sequencing of 945 Han individuals identifies structural variants associated with phenotypic diversity and disease susceptibility
Jiao Gong, Huiru Sun, Kaiyuan Wang, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 3
Samplot: a platform for structural variant visual validation and automated filtering
Jonathan R. Belyeu, Murad Chowdhury, Joseph Brown, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 94
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
Sergey Aganezov, Sara Goodwin, Rachel M. Sherman, et al.
Genome Research (2020) Vol. 30, Iss. 9, pp. 1258-1273
Open Access | Times Cited: 89
Building pan-genome infrastructures for crop plants and their use in association genetics
Murukarthick Jayakodi, Mona Schreiber, Nils Stein, et al.
DNA Research (2021) Vol. 28, Iss. 1
Open Access | Times Cited: 85
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