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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data
Vanessa R. Marcelino, Philip T. L. C. Clausen, Jan P. Buchmann, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 136

Showing 1-25 of 136 citing articles:

Critical Assessment of Metagenome Interpretation: the second round of challenges
Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, et al.
Nature Methods (2022) Vol. 19, Iss. 4, pp. 429-440
Open Access | Times Cited: 243
MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities
Ziye Wang, Pingqin Huang, Ronghui You, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 46
Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
Abigail Lind, Katherine S. Pollard
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 83
Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium
Cíntia Iha, Katherine E. Dougan, Javier A. Varela, et al.
Current Biology (2021) Vol. 31, Iss. 7, pp. 1393-1402.e5
Open Access | Times Cited: 56
Candida auris on Apples: Diversity and Clinical Significance
Anamika Yadav, Kusum Jain, Yue Wang, et al.
mBio (2022) Vol. 13, Iss. 2
Open Access | Times Cited: 52
Transcriptome Mining Expands Knowledge of RNA Viruses across the Plant Kingdom
Jonathon C.O. Mifsud, Rachael V. Gallagher, Edward C. Holmes, et al.
Journal of Virology (2022) Vol. 96, Iss. 24
Open Access | Times Cited: 49
Whole genome sequencing and phylogenomic analysis show support for the splitting of genusPythium
Hai D. T. Nguyen, Annette Dodge, Kasia Dadej, et al.
Mycologia (2022) Vol. 114, Iss. 3, pp. 501-515
Open Access | Times Cited: 42
KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping
Wei Shen, Hongyan Xiang, Tianquan Huang, et al.
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 39
Current concepts, advances, and challenges in deciphering the human microbiota with metatranscriptomics
Teija Ojala, Aino-Elina Häkkinen, Esko Kankuri, et al.
Trends in Genetics (2023) Vol. 39, Iss. 9, pp. 686-702
Open Access | Times Cited: 24
Comparative analysis of metagenomic classifiers for long-read sequencing datasets
Josip Marić, Krešimir Križanović, Sylvain Riondet, et al.
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 13
A ~40-kb flavi-like virus does not encode a known error-correcting mechanism
Mary E. Petrone, Joe Grove, Julien Mélade, et al.
Proceedings of the National Academy of Sciences (2024) Vol. 121, Iss. 30
Open Access | Times Cited: 12
Hiding in plain sight: the biomolecular identification of pinniped use in medieval manuscripts
Élodie Lévêque, Matthew D. Teasdale, Sarah Fiddyment, et al.
Royal Society Open Science (2025) Vol. 12, Iss. 4
Open Access | Times Cited: 1
YACHT: an ANI-based statistical test to detect microbial presence/absence in a metagenomic sample
David Koslicki, Stephen White, Chunyu Ma, et al.
Bioinformatics (2024) Vol. 40, Iss. 2
Open Access | Times Cited: 8
Australian terrestrial environments harbour extensive RNA virus diversity
Sabrina Sadiq, Erin Harvey, Jonathon C.O. Mifsud, et al.
Virology (2024) Vol. 593, pp. 110007-110007
Open Access | Times Cited: 7
First evidence for the joint dispersal of mycorrhizal fungi and plant diaspores by birds
Marta Correia, Rúben Heleno, Luís P. da Silva, et al.
New Phytologist (2018) Vol. 222, Iss. 2, pp. 1054-1060
Open Access | Times Cited: 59
Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg
Maite Ghazaleh Bucher, Benjamin Zwirzitz, Adelumola Oladeinde, et al.
Journal of Environmental Quality (2020) Vol. 49, Iss. 4, pp. 869-881
Open Access | Times Cited: 48
Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, et al.
Scientific Reports (2021) Vol. 11, Iss. 1
Open Access | Times Cited: 40
Transcriptome mining extends the host range of the Flaviviridae to non-bilaterians
Jonathon C.O. Mifsud, Vincenzo A. Costa, Mary E. Petrone, et al.
Virus Evolution (2022) Vol. 9, Iss. 1
Open Access | Times Cited: 27
Genomic Analysis of ESBL-Producing E. coli in Wildlife from North-Eastern Germany
Timo Homeier‐Bachmann, Anne K. Schütz, Sylvia Dreyer, et al.
Antibiotics (2022) Vol. 11, Iss. 2, pp. 123-123
Open Access | Times Cited: 24
Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics
Bárbara Brito, Melinda Frost, Kay Anantanawat, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 14
Evidence for an ancient aquatic origin of the RNA viral order Articulavirales
Mary E. Petrone, Rhys Parry, Jonathon C.O. Mifsud, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 45
Open Access | Times Cited: 14
The use of taxon-specific reference databases compromises metagenomic classification
Vanessa R. Marcelino, Edward C. Holmes, Tania C. Sorrell
BMC Genomics (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 39
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
Arianna I. Krinos, Sarah K. Hu, Natalie R. Cohen, et al.
The Journal of Open Source Software (2021) Vol. 6, Iss. 57, pp. 2817-2817
Open Access | Times Cited: 31
Limited transmission of microbial species among coral reef fishes from the Great Barrier Reef, Australia
Vincenzo A. Costa, David R. Bellwood, Jonathon C.O. Mifsud, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 4
Phylogenetic Diversity and Geographic Distribution of Atlantic Salmon Calicivirus in Major Salmon Farming Regions
Vincenzo A. Costa, Aase B. Mikalsen, Francisca Samsing
Journal of Fish Diseases (2025)
Open Access
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