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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Opportunities and challenges in long-read sequencing data analysis
Shanika L. Amarasinghe, Shian Su, Xueyi Dong, et al.
Genome biology (2020) Vol. 21, Iss. 1
Open Access | Times Cited: 2043

Showing 1-25 of 2043 citing articles:

YaHS: yet another Hi-C scaffolding tool
Chenxi Zhou, Shane McCarthy, Richard Durbin
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 1266
Nanopore sequencing technology, bioinformatics and applications
Yunhao Wang, Yue Zhao, Audrey Bollas, et al.
Nature Biotechnology (2021) Vol. 39, Iss. 11, pp. 1348-1365
Open Access | Times Cited: 1138
Next-Generation Sequencing Technology: Current Trends and Advancements
Heena Satam, Kandarp Joshi, Upasana Mangrolia, et al.
Biology (2023) Vol. 12, Iss. 7, pp. 997-997
Open Access | Times Cited: 531
stLearn: integrating spatial location, tissue morphology and gene expression to find cell types, cell-cell interactions and spatial trajectories within undissociated tissues
Duy Pham, Xiao Tan, Jun Xu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2020)
Open Access | Times Cited: 312
hdWGCNA identifies co-expression networks in high-dimensional transcriptomics data
Samuel Morabito, Fairlie Reese, Negin Rahimzadeh, et al.
Cell Reports Methods (2023) Vol. 3, Iss. 6, pp. 100498-100498
Open Access | Times Cited: 272
Examining horizontal gene transfer in microbial communities
Ilana Brito
Nature Reviews Microbiology (2021) Vol. 19, Iss. 7, pp. 442-453
Closed Access | Times Cited: 264
Improved transcriptome assembly using a hybrid of long and short reads with StringTie
Alaina Shumate, Brandon Wong, Geo Pertea, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 6, pp. e1009730-e1009730
Open Access | Times Cited: 240
Machine learning in plant science and plant breeding
Aalt D. J. van Dijk, Gert Kootstra, Willem Kruijer, et al.
iScience (2020) Vol. 24, Iss. 1, pp. 101890-101890
Open Access | Times Cited: 219
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities
Matteo Chiara, Anna Maria D’Erchia, Carmela Gissi, et al.
Briefings in Bioinformatics (2020) Vol. 22, Iss. 2, pp. 616-630
Open Access | Times Cited: 205
Transcriptome variation in human tissues revealed by long-read sequencing
Dafni A. Glinos, Garrett Garborcauskas, Paul Hoffman, et al.
Nature (2022) Vol. 608, Iss. 7922, pp. 353-359
Open Access | Times Cited: 193
Single-cell RNA sequencing reveals SARS-CoV-2 infection dynamics in lungs of African green monkeys
Emily Speranza, Brandi N. Williamson, Friederike Feldmann, et al.
Science Translational Medicine (2021) Vol. 13, Iss. 578
Open Access | Times Cited: 175
Diversity and ecology of protists revealed by metabarcoding
Fabien Burki, Miguel M. Sandin, Mahwash Jamy
Current Biology (2021) Vol. 31, Iss. 19, pp. R1267-R1280
Open Access | Times Cited: 164
DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation
Yang Liu, Wojciech Rosikiewicz, Ziwei Pan, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 163
Nanopore sequencing and its application to the study of microbial communities
Laura Ciuffreda, Héctor Rodríguez‐Pérez, Carlos Flores
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 1497-1511
Open Access | Times Cited: 157
Third-Generation Sequencing: The Spearhead towards the Radical Transformation of Modern Genomics
Konstantina Athanasopoulou, Michaela A. Boti, Panagiotis G. Adamopoulos, et al.
Life (2021) Vol. 12, Iss. 1, pp. 30-30
Open Access | Times Cited: 157
Multi-omics data integration considerations and study design for biological systems and disease
Stefan Graw, Kevin Chappell, Charity L. Washam, et al.
Molecular Omics (2020) Vol. 17, Iss. 2, pp. 170-185
Open Access | Times Cited: 156
A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Chao Yang, Debajyoti Chowdhury, Zhenmiao Zhang, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 19, pp. 6301-6314
Open Access | Times Cited: 155
SARS-CoV-2 growth, furin-cleavage-site adaptation and neutralization using serum from acutely infected hospitalized COVID-19 patients
William B. Klimstra, Natasha L. Tilston‐Lunel, Sham Nambulli, et al.
Journal of General Virology (2020) Vol. 101, Iss. 11, pp. 1156-1169
Open Access | Times Cited: 152
Mini review: Genome mining approaches for the identification of secondary metabolite biosynthetic gene clusters in Streptomyces
Namil Lee, Soonkyu Hwang, Jihun Kim, et al.
Computational and Structural Biotechnology Journal (2020) Vol. 18, pp. 1548-1556
Open Access | Times Cited: 148
Discovering multiple types of DNA methylation from bacteria and microbiome using nanopore sequencing
Alan Tourancheau, Edward A. Mead, Xuesong Zhang, et al.
Nature Methods (2021) Vol. 18, Iss. 5, pp. 491-498
Open Access | Times Cited: 147
Identifying biases and their potential solutions in human microbiome studies
Jacob T. Nearing, A. Comeau, Morgan G. I. Langille
Microbiome (2021) Vol. 9, Iss. 1
Open Access | Times Cited: 143
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing
Luyi Tian, Jafar S. Jabbari, Rachel Thijssen, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 142
Semi-automated assembly of high-quality diploid human reference genomes
Erich D. Jarvis, Giulio Formenti, Arang Rhie, et al.
Nature (2022) Vol. 611, Iss. 7936, pp. 519-531
Open Access | Times Cited: 141
Chromatin accessibility profiling methods
Liesbeth Minnoye, Georgi K. Marinov, Thomas Krausgruber, et al.
Nature Reviews Methods Primers (2021) Vol. 1, Iss. 1
Open Access | Times Cited: 135
Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology
Leho Tedersoo, Mads Albertsen, Sten Anslan, et al.
Applied and Environmental Microbiology (2021) Vol. 87, Iss. 17
Open Access | Times Cited: 135
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