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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

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Showing 24 citing articles:

A comparison of topologically associating domain callers over mammals at high resolution
Emre Sefer
BMC Bioinformatics (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 20
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
Guanjue Xiang, Xi He, Belinda Giardine, et al.
Genome Research (2024) Vol. 34, Iss. 7, pp. 1089-1105
Open Access | Times Cited: 4
DeDoc2 Identifies and Characterizes the Hierarchy and Dynamics of Chromatin TAD‐Like Domains in the Single Cells
Angsheng Li, Guangjie Zeng, Haoyu Wang, et al.
Advanced Science (2023) Vol. 10, Iss. 20
Open Access | Times Cited: 10
The shape of chromatin: insights from computational recognition of geometric patterns in Hi-C data
Andrea Raffo, Jonas Paulsen
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 10
ChromaFactor: Deconvolution of single-molecule chromatin organization with non-negative matrix factorization
Laura M. Gunsalus, Michael J. Keiser, Katherine S. Pollard
PLoS Computational Biology (2025) Vol. 21, Iss. 2, pp. e1012841-e1012841
Open Access
RobusTAD: reference panel based annotation of nested topologically associating domains
Yanlin Zhang, Rola Dali, Mathieu Blanchette
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Reference panel guided topological structure annotation of Hi-C data
Yanlin Zhang, Mathieu Blanchette
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 16
A comprehensive benchmarking with interpretation and operational guidance for the hierarchy of topologically associating domains
Jingxuan Xu, Xiang Xu, Dandan Huang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Identifying TAD-like domains on single-cell Hi-C data by graph embedding and changepoint detection
Erhu Liu, Hongqiang Lyu, Yuan Liu, et al.
Bioinformatics (2024) Vol. 40, Iss. 3
Open Access | Times Cited: 2
GILoop: Robust chromatin loop calling across multiple sequencing depths on Hi-C data
Fuzhou Wang, Tingxiao Gao, Jiecong Lin, et al.
iScience (2022) Vol. 25, Iss. 12, pp. 105535-105535
Open Access | Times Cited: 8
Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
Guanjue Xiang, Xi He, Belinda Giardine, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 4
Reference panel-guided super-resolution inference of Hi-C data
Yanlin Zhang, Mathieu Blanchette
Bioinformatics (2023) Vol. 39, Iss. Supplement_1, pp. i386-i393
Open Access | Times Cited: 3
Deciphering the Role of 3D Genome Organization in Breast Cancer Susceptibility
Brittany Baur, Da-Inn Lee, Jill D. Haag, et al.
Frontiers in Genetics (2022) Vol. 12
Open Access | Times Cited: 5
An Empirical Mode Decomposition-Based Method to Identify Topologically Associated Domains from Chromatin Interactions
Xuemin Zhao, Ran Duan, Shaowen Yao
Electronics (2023) Vol. 12, Iss. 19, pp. 4154-4154
Open Access | Times Cited: 2
HPTAD: A computational method to identify topologically associating domains from HiChIP and PLAC-seq datasets
Jonathan D. Rosen, Lindsay Lee, Armen Abnousi, et al.
Computational and Structural Biotechnology Journal (2023) Vol. 21, pp. 931-939
Open Access | Times Cited: 1
Examining dynamics of three-dimensional genome organization with multi-task matrix factorization
Da-Inn Lee, Sushmita Roy
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Uncovering topologically associating domains from three-dimensional genome maps with TADGATE
Dachang Dang, Shao‐Wu Zhang, Kangning Dong, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Dissecting Regulatory Non-Coding Heart Disease GWAS Loci with High-Resolution 3D Chromatin Interactions Reveals Causal Genes with Pathophysiological Relevance to Heart Failure
Richard Gill, Daniel Lu, Ittai Eres, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Uncovering topologically associating domains from three-dimensional genome maps with TADGATE
Dachang Dang, Shao-Wu Zhang, Kangning Dong, et al.
Nucleic Acids Research (2024)
Open Access
Mapping nucleosome and chromatin architectures: A survey of computational methods
Kun Fang, Junbai Wang, Lu Liu, et al.
Computational and Structural Biotechnology Journal (2022) Vol. 20, pp. 3955-3962
Open Access | Times Cited: 2
Integrative chromatin domain annotation through graph embedding of Hi-C data
Neda Shokraneh, Mariam Arab, Maxwell W. Libbrecht
Bioinformatics (2022) Vol. 39, Iss. 1
Open Access | Times Cited: 2
GrapHiC: An integrative graph based approach for imputing missing Hi-C reads
Ghulam Murtaza, Justin Wagner, Justin M. Zook, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 1
Benchmarking graph representation learning algorithms for detecting modules in molecular networks
Song Zhiwei, Brittany Baur, Sushmita Roy
F1000Research (2023) Vol. 12, pp. 941-941
Open Access
ChromaFactor: deconvolution of single-molecule chromatin organization with non-negative matrix factorization
Laura M. Gunsalus, Michael J. Keiser, Katherine S. Pollard
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access
HiCVAE: A Variational Auto-Encoder Framework for Simulating Hi-C Data
Xuemin Zhao, Ran Duan, Shaowen Yao
2021 14th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI) (2023), pp. 1-6
Closed Access
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