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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

recount3: summaries and queries for large-scale RNA-seq expression and splicing
Christopher Wilks, Shijie Zheng, Feng Yong Chen, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 190

Showing 1-25 of 190 citing articles:

A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
Joannella Morales, Shashikant Pujar, Jane Loveland, et al.
Nature (2022) Vol. 604, Iss. 7905, pp. 310-315
Open Access | Times Cited: 338
NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update
Emily Clough, Tanya Barrett, S. E. Wilhite, et al.
Nucleic Acids Research (2023) Vol. 52, Iss. D1, pp. D138-D144
Open Access | Times Cited: 139
Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles
James T. Morton, Dong-Min Jin, Robert H. Mills, et al.
Nature Neuroscience (2023) Vol. 26, Iss. 7, pp. 1208-1217
Open Access | Times Cited: 112
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, et al.
Nature Methods (2024) Vol. 21, Iss. 7, pp. 1349-1363
Open Access | Times Cited: 76
SpliceVault predicts the precise nature of variant-associated mis-splicing
Ruebena Dawes, Adam Bournazos, Samantha J. Bryen, et al.
Nature Genetics (2023) Vol. 55, Iss. 2, pp. 324-332
Open Access | Times Cited: 59
Aberrant splicing prediction across human tissues
Nils Wagner, Muhammed Hasan Çelik, Florian R. Hölzlwimmer, et al.
Nature Genetics (2023) Vol. 55, Iss. 5, pp. 861-870
Open Access | Times Cited: 50
Autonomous transposons tune their sequences to ensure somatic suppression
İbrahim Ilik, Petar Glažar, Kevin Tse, et al.
Nature (2024) Vol. 626, Iss. 8001, pp. 1116-1124
Open Access | Times Cited: 18
Predicting RNA-seq coverage from DNA sequence as a unifying model of gene regulation
Johannes Linder, Divyanshi Srivastava, Han Yuan, et al.
Nature Genetics (2025)
Open Access | Times Cited: 11
Integration of 168,000 samples reveals global patterns of the human gut microbiome
Richard J. Abdill, Samantha P. Graham, Vincent Rubinetti, et al.
Cell (2025)
Open Access | Times Cited: 5
Benchmark of cellular deconvolution methods using a multi-assay dataset from postmortem human prefrontal cortex
Louise A. Huuki-Myers, Kelsey D. Montgomery, Sang Ho Kwon, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access | Times Cited: 3
Systematically developing a registry of splice-site creating variants utilizing massive publicly available transcriptome sequence data
Naoko Iida, Ai Okada, Yoshihisa Kobayashi, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access | Times Cited: 2
SigCom LINCS: data and metadata search engine for a million gene expression signatures
John Erol Evangelista, Daniel Clarke, Zhuorui Xie, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. W1, pp. W697-W709
Open Access | Times Cited: 62
Poison cassette exon splicing ofSRSF6regulates nuclear speckle dispersal and the response to hypoxia
Camila de Oliveira Freitas Machado, Michal Schafranek, Mirko Brüggemann, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. 2, pp. 870-890
Open Access | Times Cited: 42
Single-molecule genome-wide mutation profiles of cell-free DNA for non-invasive detection of cancer
Daniel C. Bruhm, Dimitrios Mathios, Zachariah H. Foda, et al.
Nature Genetics (2023) Vol. 55, Iss. 8, pp. 1301-1310
Open Access | Times Cited: 33
Noninvasive Detection of Neuroendocrine Prostate Cancer through Targeted Cell-free DNA Methylation
Gian Marco Franceschini, Orsetta Quaini, Kei Mizuno, et al.
Cancer Discovery (2023) Vol. 14, Iss. 3, pp. 424-445
Open Access | Times Cited: 28
Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets
Sean K. Maden, Sang Ho Kwon, Louise A. Huuki-Myers, et al.
Genome biology (2023) Vol. 24, Iss. 1
Open Access | Times Cited: 25
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 25
GENCODE 2025: reference gene annotation for human and mouse
Jonathan M. Mudge, Sílvia Carbonell Sala, Mark Diekhans, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D966-D975
Open Access | Times Cited: 14
Rummagene: massive mining of gene sets from supporting materials of biomedical research publications
Daniel Clarke, Giacomo B. Marino, Eden Z. Deng, et al.
Communications Biology (2024) Vol. 7, Iss. 1
Open Access | Times Cited: 11
The annotation of GBA1 has been concealed by its protein-coding pseudogene GBAP1
Emil K. Gustavsson, Siddharth Sethi, Yujing Gao, et al.
Science Advances (2024) Vol. 10, Iss. 26
Open Access | Times Cited: 11
Gene regulatory networks reveal sex difference in lung adenocarcinoma
Enakshi Saha, Marouen Ben Guebila, Viola Fanfani, et al.
Biology of Sex Differences (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 9
Missing cell types in single-cell references impact deconvolution of bulk data but are detectable
Adriana Ivich, Natalie R. Davidson, Laurie Grieshober, et al.
Genome biology (2025) Vol. 26, Iss. 1
Open Access | Times Cited: 1
Comparative transcriptome in large-scale human and cattle populations
Yuelin Yao, Shuli Liu, Charley Xia, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 29
Characterizing the landscape of gene expression variance in humans
Scott Wolf, Diogo Melo, Kristina M. Garske, et al.
PLoS Genetics (2023) Vol. 19, Iss. 7, pp. e1010833-e1010833
Open Access | Times Cited: 23
Integrative analysis of transcriptome dynamics during human craniofacial development identifies candidate disease genes
Tara N. Yankee, Sungryong Oh, Emma Wentworth Winchester, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 23
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