OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions
Kaishu Mason, Anuja Sathe, Paul R. Hess, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 17
Kaishu Mason, Anuja Sathe, Paul R. Hess, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 17
Showing 17 citing articles:
CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data
Kevin Troulé, Robert Petryszak, Batuhan Çakır, et al.
Nature Protocols (2025)
Open Access | Times Cited: 1
Kevin Troulé, Robert Petryszak, Batuhan Çakır, et al.
Nature Protocols (2025)
Open Access | Times Cited: 1
CELLama: Foundation Model for Single Cell and Spatial Transcriptomics by Cell Embedding Leveraging Language Model Abilities
Hongyoon Choi, Jeongbin Park, Sumin Kim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Hongyoon Choi, Jeongbin Park, Sumin Kim, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 5
Towards the Next Generation of Data‐Driven Therapeutics Using Spatially Resolved Single‐Cell Technologies and Generative AI
Avital Rodov, Hosna Baniadam, Robert Zeiser, et al.
European Journal of Immunology (2025) Vol. 55, Iss. 2
Open Access
Avital Rodov, Hosna Baniadam, Robert Zeiser, et al.
European Journal of Immunology (2025) Vol. 55, Iss. 2
Open Access
Precise gene expression deconvolution in spatial transcriptomics with STged
Jia-Juan Tu, Hong Yan, Xiao-Fei Zhang, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 4
Open Access
Jia-Juan Tu, Hong Yan, Xiao-Fei Zhang, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 4
Open Access
Unraveling cell–cell communication with NicheNet by inferring active ligands from transcriptomics data
Chananchida Sang-aram, Robin Browaeys, Ruth Seurinck, et al.
Nature Protocols (2025)
Open Access
Chananchida Sang-aram, Robin Browaeys, Ruth Seurinck, et al.
Nature Protocols (2025)
Open Access
Applications of spatial transcriptomics in studying spermatogenesis
Qianlan Xu, Haiqi Chen
Andrology (2025)
Open Access
Qianlan Xu, Haiqi Chen
Andrology (2025)
Open Access
Unveiling contact-mediated cellular crosstalk
Hyobin Kim, Kwang-eun Kim, Esha Madan, et al.
Trends in Genetics (2024) Vol. 40, Iss. 10, pp. 868-879
Closed Access | Times Cited: 2
Hyobin Kim, Kwang-eun Kim, Esha Madan, et al.
Trends in Genetics (2024) Vol. 40, Iss. 10, pp. 868-879
Closed Access | Times Cited: 2
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear-cell renal-cell carcinoma tumor microenvironment
Alex C. Soupir, Mitchell Hayes, Taylor Peak, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Alex C. Soupir, Mitchell Hayes, Taylor Peak, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2
Rapid and memory-efficient analysis and quality control of large spatial transcriptomics datasets
Bence Kӧvér, Alessandra Vigilante
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Bence Kӧvér, Alessandra Vigilante
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
Spatial Transcriptomics Identifies Cellular and Molecular Characteristics of Scleroderma Skin Lesions: Pilot Study in Juvenile Scleroderma
Tianhao Liu, Deren Esencan, Cláudia Salgado, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 17, pp. 9182-9182
Open Access | Times Cited: 1
Tianhao Liu, Deren Esencan, Cláudia Salgado, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 17, pp. 9182-9182
Open Access | Times Cited: 1
metsDB: a knowledgebase of cancer metastasis at bulk, single-cell and spatial levels
Sijia Wu, Jiajin Zhang, Yanfei Wang, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D1427-D1434
Open Access | Times Cited: 1
Sijia Wu, Jiajin Zhang, Yanfei Wang, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D1427-D1434
Open Access | Times Cited: 1
NiCo identifies extrinsic drivers of cell state modulation by niche covariation analysis
Ankit Agrawal, Stefan Thomann, Sukanya Basu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 1
Ankit Agrawal, Stefan Thomann, Sukanya Basu, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 1
Integrative spatial omics reveals distinct tumor-promoting multicellular niches and immunosuppressive mechanisms in African American and European American patients with TNBC
Qian Zhu, Akhila Balasubramanian, Jaya Ruth Asirvatham, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Qian Zhu, Akhila Balasubramanian, Jaya Ruth Asirvatham, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Current computational methods for spatial transcriptomics in cancer biology
Jaewoo Mo, J. Bae, Jahanzeb Saqib, et al.
Advances in cancer research (2024), pp. 71-106
Closed Access
Jaewoo Mo, J. Bae, Jahanzeb Saqib, et al.
Advances in cancer research (2024), pp. 71-106
Closed Access
Navigating the immunosuppressive brain tumor microenvironment using spatial biology
Samuel S. Widodo, Marija Dinevska, Stanley S. Stylli, et al.
ImmunoInformatics (2024) Vol. 15, pp. 100041-100041
Open Access
Samuel S. Widodo, Marija Dinevska, Stanley S. Stylli, et al.
ImmunoInformatics (2024) Vol. 15, pp. 100041-100041
Open Access
Spatial resolved transcriptomics: Computational insights into gene transcription across tissue and organ architecture in diverse applications
Zhen Miao, Tian Tian, Wei Chen, et al.
The Innovation Life (2024), pp. 100097-100097
Closed Access
Zhen Miao, Tian Tian, Wei Chen, et al.
The Innovation Life (2024), pp. 100097-100097
Closed Access
Cell-specific priors rescue differential gene expression in spatial spot-based technologies
Ornit Nahman, Timothy J Few-Cooper, Shai S. Shen-Orr
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access
Ornit Nahman, Timothy J Few-Cooper, Shai S. Shen-Orr
Briefings in Bioinformatics (2024) Vol. 26, Iss. 1
Open Access
