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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Integrative prediction of gene expression with chromatin accessibility and conformation data
Florian Schmidt, Fabian Kern, Marcel H. Schulz
Epigenetics & Chromatin (2020) Vol. 13, Iss. 1
Open Access | Times Cited: 37

Showing 1-25 of 37 citing articles:

Gene therapy for liver diseases — progress and challenges
Nerea Zabaleta, Carmen Unzu, Nicholas D. Weber, et al.
Nature Reviews Gastroenterology & Hepatology (2023) Vol. 20, Iss. 5, pp. 288-305
Closed Access | Times Cited: 43
The adapted Activity-By-Contact model for enhancer–gene assignment and its application to single-cell data
Dennis Hecker, Fatemeh Behjati Ardakani, Alexander Karollus, et al.
Bioinformatics (2023) Vol. 39, Iss. 2
Open Access | Times Cited: 27
Transcription factors: building hubs in the 3D space
Dafne Campigli Di Giammartino, Alexander Polyzos, Effie Apostolou
Cell Cycle (2020) Vol. 19, Iss. 19, pp. 2395-2410
Open Access | Times Cited: 63
A hierarchical regulatory network analysis of the vitamin D induced transcriptome reveals novel regulators and complete VDR dependency in monocytes
Timothy Warwick, Marcel H. Schulz, Stefan Günther, et al.
Scientific Reports (2021) Vol. 11, Iss. 1
Open Access | Times Cited: 40
Machine learning for deciphering cell heterogeneity and gene regulation
Michael Scherer, Florian Schmidt, Olga Lazareva, et al.
Nature Computational Science (2021) Vol. 1, Iss. 3, pp. 183-191
Open Access | Times Cited: 34
EpiRegio: analysis and retrieval of regulatory elements linked to genes
Nina Baumgarten, Dennis Hecker, Sivarajan Karunanithi, et al.
Nucleic Acids Research (2020) Vol. 48, Iss. W1, pp. W193-W199
Open Access | Times Cited: 36
Integrative analysis of epigenetics data identifies gene-specific regulatory elements
Florian Schmidt, Alexander Marx, Nina Baumgarten, et al.
Nucleic Acids Research (2021) Vol. 49, Iss. 18, pp. 10397-10418
Open Access | Times Cited: 31
A machine learning approach for multimodal data fusion for survival prediction in cancer patients
Νικόλαος Νικολάου, Domingo M. Salazar, Harish RaviPrakash, et al.
npj Precision Oncology (2025) Vol. 9, Iss. 1
Open Access
3D genome organization links non-coding disease-associated variants to genes
Gisela Orozco, Stefan Schoenfelder, Nicolas J. Walker, et al.
Frontiers in Cell and Developmental Biology (2022) Vol. 10
Open Access | Times Cited: 15
Computational tools for inferring transcription factor activity
Dennis Hecker, Michael Lauber, Fatemeh Behjati Ardakani, et al.
PROTEOMICS (2023) Vol. 23, Iss. 23-24
Open Access | Times Cited: 9
Quantifying the advantage of multimodal data fusion for survival prediction in cancer patients
Νικόλαος Νικολάου, Domingo M. Salazar, Harish RaviPrakash, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 3
Genetic analysis of scab disease resistance in common bean (Phaseolus vulgaris) varieties using GWAS and functional genomics approaches
Shadrack Odikara Oriama, Benard W. Kulohoma, Evans N. Nyaboga, et al.
CABI Agriculture and Bioscience (2024) Vol. 5, Iss. 1
Open Access | Times Cited: 3
Macrophage memory emerges from coordinated transcription factor and chromatin dynamics
Andrew G. Wang, Minjun Son, Aleksandr M. Gorin, et al.
Cell Systems (2025), pp. 101171-101171
Closed Access
Integrative computational epigenomics to build data-driven gene regulation hypotheses
Tyrone Chen, Sonika Tyagi
GigaScience (2020) Vol. 9, Iss. 6
Open Access | Times Cited: 21
Predicting Cold-Stress Responsive Genes in Cotton with Machine Learning Models
Mengke Zhang, Yayuan Deng, WY Shi, et al.
Crop Design (2024), pp. 100085-100085
Open Access | Times Cited: 2
Prediction of single-cell gene expression for transcription factor analysis
Fatemeh Behjati Ardakani, Kathrin Kattler, Tobias Heinen, et al.
GigaScience (2020) Vol. 9, Iss. 11
Open Access | Times Cited: 14
Differential contribution to gene expression prediction of histone modifications at enhancers or promoters
Mar González-Ramírez, Cecilia Ballaré, Francesca Mugianesi, et al.
PLoS Computational Biology (2021) Vol. 17, Iss. 9, pp. e1009368-e1009368
Open Access | Times Cited: 12
Dynamic chromatin accessibility landscapes of osteoblast differentiation and mineralization
Yueqi Chen, Jiulin Tan, Chuan Yang, et al.
Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease (2023) Vol. 1870, Iss. 2, pp. 166938-166938
Closed Access | Times Cited: 5
Prediction of whole-cell transcriptional response with machine learning
Mohammed Eslami, Amin Espah Borujeni, Hamed Eramian, et al.
Bioinformatics (2021) Vol. 38, Iss. 2, pp. 404-409
Open Access | Times Cited: 11
Machine learning on multiple epigenetic features reveals H3K27Ac as a driver of gene expression prediction across patients with glioblastoma.
Yusuke Suita, Hardy Bright, Yuan Pu, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 1
dHICA: a deep transformer-based model enables accurate histone imputation from chromatin accessibility
Wen Wen, Jiaxin Zhong, Zhaoxi Zhang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 6
Open Access | Times Cited: 1
Predicting the effect of CRISPR-Cas9-based epigenome editing
Sanjit Singh Batra, Alan Cabrera, Jeffrey P. Spence, et al.
(2024)
Open Access | Times Cited: 1
Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources
Neel Patel, William S. Bush
BMC Bioinformatics (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 9
Natural Antisense Transcript PEBP1P3 Regulates the RNA Expression, DNA Methylation and Histone Modification of CD45 Gene
Zhongjing Su, Guangyu Liu, Bin Zhang, et al.
Genes (2021) Vol. 12, Iss. 5, pp. 759-759
Open Access | Times Cited: 8
Modeling Transcriptional Regulation Using Gene Regulatory Networks Based on Multi-Omics Data Sources
Neel Patel, William S. Bush
Research Square (Research Square) (2020)
Open Access | Times Cited: 3
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