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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data
Siu Fung Stanley Ho, Nicole E. Wheeler, Andrew Millard, et al.
Microbiome (2023) Vol. 11, Iss. 1
Open Access | Times Cited: 33

Showing 1-25 of 33 citing articles:

Antimicrobial resistance crisis: could artificial intelligence be the solution?
Guangyu Liu, Dan Yu, Mei-Mei Fan, et al.
Military Medical Research (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 40
ViWrap: A modular pipeline to identify, bin, classify, and predict viral–host relationships for viruses from metagenomes
Zhichao Zhou, Cody Martin, James C. Kosmopoulos, et al.
iMeta (2023) Vol. 2, Iss. 3
Open Access | Times Cited: 27
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes
Ling-Yi Wu, Yasas Wijesekara, Gonçalo J. Piedade, et al.
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 13
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models
Guillermo Rangel-Piñeros, Alexandre Almeida, Martín Beracochea, et al.
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011422-e1011422
Open Access | Times Cited: 19
Evaluation of computational phage detection tools for metagenomic datasets
Kenneth Schackart, Jessica B. Graham, Alise J. Ponsero, et al.
Frontiers in Microbiology (2023) Vol. 14
Open Access | Times Cited: 18
Metagenomic assembly is the main bottleneck in the identification of mobile genetic elements
Jesse Kerkvliet, Alex Bossers, Jannigje G. Kers, et al.
PeerJ (2024) Vol. 12, pp. e16695-e16695
Open Access | Times Cited: 8
Benchmarking informatics approaches for virus discovery: caution is needed when combining in silico identification methods
Bridget Hegarty, James A. Riddell, Eric Bastien, et al.
mSystems (2024) Vol. 9, Iss. 3
Open Access | Times Cited: 6
What the Phage: a scalable workflow for the identification and analysis of phage sequences
Mike Marquet, Martin Hölzer, Mathias W. Pletz, et al.
GigaScience (2022) Vol. 11
Open Access | Times Cited: 27
Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
Justine Charon, Ingrida Olendraitė, Marco Forgia, et al.
Frontiers in Virology (2024) Vol. 4
Open Access | Times Cited: 5
The insights into the phage communities of fermented foods in the age of viral metagenomics
Huadong Zhang, Hongxia Zhang, Hai Du, et al.
Critical Reviews in Food Science and Nutrition (2024), pp. 1-13
Closed Access | Times Cited: 4
Emerging applications of artificial intelligence in pathogen genomics
C. J. E. Suster, David Pham, Jen Kok, et al.
Frontiers in Bacteriology (2024) Vol. 3
Open Access | Times Cited: 4
VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes
Yanqi Dong, Weihua Chen, Xing‐Ming Zhao
Genome biology (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 4
Metagenome sequence data mining for viral interaction studies: Review on progress and prospects
Mohammadreza Rahimian, Bahman Panahi
Virus Research (2024) Vol. 349, pp. 199450-199450
Open Access | Times Cited: 4
Exploring deep learning in phage discovery and characterization
Malena Regina De Freitas E SILVA, Vitória Yumi Uetuki Nicoleti, Bárbara Rodrigues, et al.
Virology (2025), pp. 110559-110559
Closed Access
VESPA: an optimized protocol for accurate metabarcoding-based characterization of vertebrate eukaryotic endosymbiont and parasite assemblages
L. Owens, Sagan Friant, Bruno Martorelli Di Genova, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 3
Insights into diversity, host-range, and temporal stability of Bacteroides and Phocaeicola prophages
Nejc Stopnišek, Stina Hedžet, Tomaž Accetto, et al.
BMC Microbiology (2025) Vol. 25, Iss. 1
Open Access
Phage‐Based Biocontrol Strategies and Application in Aquatic Animal Disease Prevention and Control
Linlin Yang, Weiming Zhong, Tao Tang, et al.
Reviews in Aquaculture (2025) Vol. 17, Iss. 3
Closed Access
Benchmarking Bioinformatic Virus Identification Tools Using Real-World Metagenomic Data across Biomes
Ling-Yi Wu, Nikolaos Pappas, Yasas Wijesekara, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 7
VirGrapher: a graph-based viral identifier for long sequences from metagenomes
Yan Miao, Zhenyuan Sun, Chenjing Ma, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 2
Open Access | Times Cited: 2
Tools and methodology to in silico phage discovery in freshwater environments
Carlos Willian Dias Dantas, David Tavares Martins, Wylerson Guimarães Nogueira, et al.
Frontiers in Microbiology (2024) Vol. 15
Open Access | Times Cited: 2
Hecatomb: an integrated software platform for viral metagenomics
Michael J. Roach, Sarah J. Beecroft, Kathie A. Mihindukulasuriya, et al.
GigaScience (2024) Vol. 13
Open Access | Times Cited: 2
Bacteriophage communities are a reservoir of unexplored microbial diversity in neonatal health and disease
Gregory R. Young, Andrew Nelson, Christopher J. Stewart, et al.
Current Opinion in Microbiology (2023) Vol. 75, pp. 102379-102379
Open Access | Times Cited: 2
Metagenomic Analysis of Bronchoalveolar Lavage Fluid Enables Differential Diagnosis Between Lung Cancer and Pulmonary Infections
Yu Chen, Dongsheng Han, Fei Yu, et al.
Research Square (Research Square) (2024)
Open Access
TransGINmer: Identifying viral sequences from metagenomes with self-attention and Graph Isomorphism Network
Jianan Wang, Zhenyuan Sun, Guohua Wang, et al.
Future Generation Computer Systems (2024) Vol. 161, pp. 445-453
Closed Access
Improving viral annotation with artificial intelligence
Zachary Flamholz, C. Li, Libusha Kelly
mBio (2024)
Open Access
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