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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Concepts and limitations for learning developmental trajectories from single cell genomics
Sophie Tritschler, Maren Büttner, David S. Fischer, et al.
Development (2019) Vol. 146, Iss. 12
Open Access | Times Cited: 207

Showing 1-25 of 207 citing articles:

Generalizing RNA velocity to transient cell states through dynamical modeling
Volker Bergen, Marius Lange, Stefan Peidli, et al.
Nature Biotechnology (2020) Vol. 38, Iss. 12, pp. 1408-1414
Open Access | Times Cited: 2170
Single-cell transcriptional diversity is a hallmark of developmental potential
Gunsagar S. Gulati, Shaheen S. Sikandar, Daniel J. Wesche, et al.
Science (2020) Vol. 367, Iss. 6476, pp. 405-411
Open Access | Times Cited: 933
scMC learns biological variation through the alignment of multiple single-cell genomics datasets
Lihua Zhang, Qing Nie
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 656
Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis
Maximilian Strunz, Lukas M. Simon, Meshal Ansari, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 526
Lineage tracing meets single-cell omics: opportunities and challenges
Daniel E. Wagner, Allon M. Klein
Nature Reviews Genetics (2020) Vol. 21, Iss. 7, pp. 410-427
Open Access | Times Cited: 498
Statistics or biology: the zero-inflation controversy about scRNA-seq data
Ruochen Jiang, Tianyi Sun, Dongyuan Song, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 457
What is a cell type and how to define it?
Hongkui Zeng
Cell (2022) Vol. 185, Iss. 15, pp. 2739-2755
Open Access | Times Cited: 278
Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution
Dian Yang, Matthew G. Jones, Santiago Naranjo, et al.
Cell (2022) Vol. 185, Iss. 11, pp. 1905-1923.e25
Open Access | Times Cited: 221
Autism spectrum disorder at the crossroad between genes and environment: contributions, convergences, and interactions in ASD developmental pathophysiology
Cristina Cheroni, Nicolò Caporale, Giuseppe Testa
Molecular Autism (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 194
A single-embryo, single-cell time-resolved model for mouse gastrulation
Markus Mittnenzweig, Yoav Mayshar, Saifeng Cheng, et al.
Cell (2021) Vol. 184, Iss. 11, pp. 2825-2842.e22
Open Access | Times Cited: 172
Generalizing RNA velocity to transient cell states through dynamical modeling
Volker Bergen, Marius Lange, Stefan Peidli, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2019)
Closed Access | Times Cited: 163
Live-seq enables temporal transcriptomic recording of single cells
Wanze Chen, Orane Guillaume‐Gentil, Pernille Yde Rainer, et al.
Nature (2022) Vol. 608, Iss. 7924, pp. 733-740
Open Access | Times Cited: 155
Recording development with single cell dynamic lineage tracing
Aaron McKenna, James A. Gagnon
Development (2019) Vol. 146, Iss. 12
Open Access | Times Cited: 151
Temporal modelling using single-cell transcriptomics
Jun Ding, Nadav Sharon, Ziv Bar‐Joseph
Nature Reviews Genetics (2022) Vol. 23, Iss. 6, pp. 355-368
Open Access | Times Cited: 120
Over 1000 tools reveal trends in the single-cell RNA-seq analysis landscape
Luke Zappia, Fabian J. Theis
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 117
RNA velocity unraveled
Gennady Gorin, Meichen Fang, Tara Chari, et al.
PLoS Computational Biology (2022) Vol. 18, Iss. 9, pp. e1010492-e1010492
Open Access | Times Cited: 117
Learning single-cell perturbation responses using neural optimal transport
Charlotte Bunne, Stefan G. Stark, Gabriele Gut, et al.
Nature Methods (2023) Vol. 20, Iss. 11, pp. 1759-1768
Open Access | Times Cited: 55
Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
Carolin Grones, Thomas Eekhout, Dongbo Shi, et al.
The Plant Cell (2024) Vol. 36, Iss. 4, pp. 812-828
Open Access | Times Cited: 25
Annelid adult cell type diversity and their pluripotent cellular origins
Patricia Álvarez‐Campos, Helena García-Castro, Elena Emili, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 18
The evolving concept of cell identity in the single cell era
Samantha A. Morris
Development (2019) Vol. 146, Iss. 12
Closed Access | Times Cited: 141
Targeted pharmacological therapy restores β-cell function for diabetes remission
Stephan Sachs, Aimée Bastidas-Ponce, Sophie Tritschler, et al.
Nature Metabolism (2020) Vol. 2, Iss. 2, pp. 192-209
Open Access | Times Cited: 127
Computational Methods for Single-Cell RNA Sequencing
Brian Hie, Joshua M. Peters, Sarah K. Nyquist, et al.
Annual Review of Biomedical Data Science (2020) Vol. 3, Iss. 1, pp. 339-364
Open Access | Times Cited: 90
Phylodynamics for cell biologists
Tanja Stadler, Oliver G. Pybus, Michael P. H. Stumpf
Science (2021) Vol. 371, Iss. 6526
Closed Access | Times Cited: 74
Immunology in the Era of Single-Cell Technologies
Mirjana Efremova, Roser Vento‐Tormo, Jong-Eun Park, et al.
Annual Review of Immunology (2020) Vol. 38, Iss. 1, pp. 727-757
Open Access | Times Cited: 72
ACME dissociation: a versatile cell fixation-dissociation method for single-cell transcriptomics
Helena García-Castro, Nathan J. Kenny, Marta Iglesias, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 71
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