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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
Hao Wang, Simonas Marcišauskas, Benjamín J. Sánchez, et al.
PLoS Computational Biology (2018) Vol. 14, Iss. 10, pp. e1006541-e1006541
Open Access | Times Cited: 316

Showing 1-25 of 316 citing articles:

Current status and applications of genome-scale metabolic models
Changdai Gu, Gi Bae Kim, Won Jun Kim, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 645
Systems Metabolic Engineering Strategies: Integrating Systems and Synthetic Biology with Metabolic Engineering
Kyeong Rok Choi, Woo Dae Jang, Dongsoo Yang, et al.
Trends in biotechnology (2019) Vol. 37, Iss. 8, pp. 817-837
Closed Access | Times Cited: 465
An atlas of human metabolism
Jonathan L. Robinson, Pınar Kocabaş, Hao Wang, et al.
Science Signaling (2020) Vol. 13, Iss. 624
Open Access | Times Cited: 332
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Laura Judith Marcos-Zambrano, Kanita Karađuzović-Hadžiabdić, Tatjana Lončar-Turukalo, et al.
Frontiers in Microbiology (2021) Vol. 12
Open Access | Times Cited: 248
Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
Feiran Li, Le Yuan, Hongzhong Lu, et al.
Nature Catalysis (2022) Vol. 5, Iss. 8, pp. 662-672
Open Access | Times Cited: 246
Reconstructing organisms in silico: genome-scale models and their emerging applications
Xin Fang, Colton J. Lloyd, Bernhard Ø. Palsson
Nature Reviews Microbiology (2020) Vol. 18, Iss. 12, pp. 731-743
Open Access | Times Cited: 231
A systematic assessment of current genome-scale metabolic reconstruction tools
Sebastián N. Mendoza, Brett G. Olivier, Douwe Molenaar, et al.
Genome biology (2019) Vol. 20, Iss. 1
Open Access | Times Cited: 211
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models
Johannes Zimmermann, Christoph Kaleta, Silvio Waschina
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 190
Endophytic Fungi: Key Insights, Emerging Prospects, and Challenges in Natural Product Drug Discovery
Pragya Tiwari, Hanhong Bae
Microorganisms (2022) Vol. 10, Iss. 2, pp. 360-360
Open Access | Times Cited: 128
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis
David B. Bernstein, Snorre Sulheim, Eivind Almaas, et al.
Genome biology (2021) Vol. 22, Iss. 1
Open Access | Times Cited: 113
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0
Iván Domenzain, Benjamín J. Sánchez, Mihail Anton, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 99
Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0
Yu Chen, Johan Gustafsson, Albert Tafur Rangel, et al.
Nature Protocols (2024) Vol. 19, Iss. 3, pp. 629-667
Closed Access | Times Cited: 33
Strategies for tailoring functional microbial synthetic communities
Jiayi Jing, Paolina Garbeva, Jos M. Raaijmakers, et al.
The ISME Journal (2024) Vol. 18, Iss. 1
Open Access | Times Cited: 26
Genome-resolved metagenomics: a game changer for microbiome medicine
Nayeon Kim, Junyeong Ma, Wonjong Kim, et al.
Experimental & Molecular Medicine (2024) Vol. 56, Iss. 7, pp. 1501-1512
Open Access | Times Cited: 19
Synthetic biology and metabolic engineering of actinomycetes for natural product discovery
Emilia Palazzotto, Yaojun Tong, Sang Yup Lee, et al.
Biotechnology Advances (2019) Vol. 37, Iss. 6, pp. 107366-107366
Closed Access | Times Cited: 134
C/N ratio and carbon source-dependent lipid production profiling in Rhodotorula toruloides
Helberth Júnnior Santos Lopes, Nemailla Bonturi, Eduard J. Kerkhoven, et al.
Applied Microbiology and Biotechnology (2020) Vol. 104, Iss. 6, pp. 2639-2649
Open Access | Times Cited: 99
Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data
Anurag Passi, Juan D. Tibocha‐Bonilla, Manish Kumar, et al.
Metabolites (2021) Vol. 12, Iss. 1, pp. 14-14
Open Access | Times Cited: 94
Genome-scale metabolic network reconstruction of model animals as a platform for translational research
Hao Wang, Jonathan L. Robinson, Pınar Kocabaş, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 30
Open Access | Times Cited: 80
Nitrogen limitation reveals large reserves in metabolic and translational capacities of yeast
Rosemary Yu, Kate Campbell, Rui Pereira, et al.
Nature Communications (2020) Vol. 11, Iss. 1
Open Access | Times Cited: 78
Machine learning approach to gene essentiality prediction: a review
Olufemi Aromolaran, Damilare Aromolaran, Itunuoluwa Isewon, et al.
Briefings in Bioinformatics (2021) Vol. 22, Iss. 5
Open Access | Times Cited: 77
Human Systems Biology and Metabolic Modelling: A Review—From Disease Metabolism to Precision Medicine
Claudio Angione
BioMed Research International (2019) Vol. 2019, pp. 1-16
Open Access | Times Cited: 76
Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast
Carl Malina, Rosemary Yu, Johan Björkeroth, et al.
Proceedings of the National Academy of Sciences (2021) Vol. 118, Iss. 51
Open Access | Times Cited: 68
Computational modeling of metabolism in microbial communities on a genome-scale
Analeigha V. Colarusso, Isabella M. Goodchild-Michelman, Maya Rayle, et al.
Current Opinion in Systems Biology (2021) Vol. 26, pp. 46-57
Open Access | Times Cited: 66
Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints
Feiran Li, Yu Chen, Qi Qi, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 52
Genome-scale metabolic network models: from first-generation to next-generation
Chao Ye, Xinyu Wei, Tian‐Qiong Shi, et al.
Applied Microbiology and Biotechnology (2022) Vol. 106, Iss. 13-16, pp. 4907-4920
Closed Access | Times Cited: 40
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