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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Predicting three-dimensional genome organization with chromatin states
Yifeng Qi, Bin Zhang
PLoS Computational Biology (2019) Vol. 15, Iss. 6, pp. e1007024-e1007024
Open Access | Times Cited: 127

Showing 1-25 of 127 citing articles:

The evolving metabolic landscape of chromatin biology and epigenetics
Ziwei Dai, Vijyendra Ramesh, Jason W. Locasale
Nature Reviews Genetics (2020) Vol. 21, Iss. 12, pp. 737-753
Open Access | Times Cited: 364
Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin
Sean A. Montgomery, Yasuhiro Tanizawa, Bence Galik, et al.
Current Biology (2020) Vol. 30, Iss. 4, pp. 573-588.e7
Open Access | Times Cited: 205
Modern epigenetics methods in biological research
Yuanyuan Li
Methods (2020) Vol. 187, pp. 104-113
Open Access | Times Cited: 197
Large-Scale Topological Changes Restrain Malignant Progression in Colorectal Cancer
Sarah E. Johnstone, Alejandro Reyes, Yifeng Qi, et al.
Cell (2020) Vol. 182, Iss. 6, pp. 1474-1489.e23
Open Access | Times Cited: 188
Methods for ChIP-seq analysis: A practical workflow and advanced applications
Ryuichiro Nakato, Toyonori Sakata
Methods (2020) Vol. 187, pp. 44-53
Open Access | Times Cited: 179
DeepC: predicting 3D genome folding using megabase-scale transfer learning
Ron Schweßinger, Matthew Gosden, Damien J. Downes, et al.
Nature Methods (2020) Vol. 17, Iss. 11, pp. 1118-1124
Open Access | Times Cited: 170
Machine learning meets omics: applications and perspectives
Rufeng Li, Lixin Li, Yungang Xu, et al.
Briefings in Bioinformatics (2021) Vol. 23, Iss. 1
Closed Access | Times Cited: 117
Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening
Jimin Tan, Nina Shenker-Tauris, Javier Rodriguez-Hernaez, et al.
Nature Biotechnology (2023) Vol. 41, Iss. 8, pp. 1140-1150
Open Access | Times Cited: 65
Polymer folding through active processes recreates features of genome organization
Andriy Goychuk, Deepti Kannan, Arup K. Chakraborty, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 20
Open Access | Times Cited: 45
Maximum Entropy Optimized Force Field for Intrinsically Disordered Proteins
Andrew P. Latham, Bin Zhang
Journal of Chemical Theory and Computation (2019) Vol. 16, Iss. 1, pp. 773-781
Open Access | Times Cited: 98
Principles of 3D compartmentalization of the human genome
Michael H. Nichols, Victor G. Corces
Cell Reports (2021) Vol. 35, Iss. 13, pp. 109330-109330
Open Access | Times Cited: 86
Multiscale modeling of genome organization with maximum entropy optimization
Xingcheng Lin, Yifeng Qi, Andrew P. Latham, et al.
The Journal of Chemical Physics (2021) Vol. 155, Iss. 1
Open Access | Times Cited: 83
Consistent Force Field Captures Homologue-Resolved HP1 Phase Separation
Andrew P. Latham, Bin Zhang
Journal of Chemical Theory and Computation (2021) Vol. 17, Iss. 5, pp. 3134-3144
Open Access | Times Cited: 82
Coupling chromatin structure and dynamics by live super-resolution imaging
Roman Barth, Kerstin Bystricky, Haitham A. Shaban
Science Advances (2020) Vol. 6, Iss. 27
Open Access | Times Cited: 81
Loop-extrusion and polymer phase-separation can co-exist at the single-molecule level to shape chromatin folding
Mattia Conte, Ehsan Irani, Andrea M. Chiariello, et al.
Nature Communications (2022) Vol. 13, Iss. 1
Open Access | Times Cited: 68
Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface
Xinqiang Ding, Xingcheng Lin, Bin Zhang
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 59
Generation of dynamic three-dimensional genome structure through phase separation of chromatin
Shin Fujishiro, Masaki Sasai
Proceedings of the National Academy of Sciences (2022) Vol. 119, Iss. 22
Open Access | Times Cited: 58
Chromatin network retards nucleoli coalescence
Yifeng Qi, Bin Zhang
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 57
BRD2 compartmentalizes the accessible genome
Liangqi Xie, Peng Dong, Yifeng Qi, et al.
Nature Genetics (2022) Vol. 54, Iss. 4, pp. 481-491
Open Access | Times Cited: 47
Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion
Sumitabha Brahmachari, Vinícius G. Contessoto, Michele Di Pierro, et al.
Nucleic Acids Research (2022) Vol. 50, Iss. 8, pp. 4258-4271
Open Access | Times Cited: 45
Computational methods for analysing multiscale 3D genome organization
Yang Zhang, Lorenzo Boninsegna, Muyu Yang, et al.
Nature Reviews Genetics (2023) Vol. 25, Iss. 2, pp. 123-141
Open Access | Times Cited: 37
Compartmentalization with nuclear landmarks yields random, yet precise, genome organization
Kartik Kamat, Zhuohan Lao, Yifeng Qi, et al.
Biophysical Journal (2023) Vol. 122, Iss. 7, pp. 1376-1389
Open Access | Times Cited: 27
Predicting scale-dependent chromatin polymer properties from systematic coarse-graining
Sangram Kadam, Kiran Kumari, Vinoth Manivannan, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 26
From Nucleosomes to Compartments: Physicochemical Interactions Underlying Chromatin Organization
Shuming Liu, Advait Athreya, Zhuohan Lao, et al.
Annual Review of Biophysics (2024) Vol. 53, Iss. 1, pp. 221-245
Open Access | Times Cited: 15
Active transcription and epigenetic reactions synergistically regulate meso-scale genomic organization
Aayush Kant, Zixian Guo, Vinayak Vinayak, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 9
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