OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
From time-series transcriptomics to gene regulatory networks: A review on inference methods
Malvina Marku, Véra Pancaldi
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011254-e1011254
Open Access | Times Cited: 15
Malvina Marku, Véra Pancaldi
PLoS Computational Biology (2023) Vol. 19, Iss. 8, pp. e1011254-e1011254
Open Access | Times Cited: 15
Showing 15 citing articles:
Interpretable AI for inference of causal molecular relationships from omics data
Payam Dibaeinia, Abhishek Ojha, Saurabh Sinha
Science Advances (2025) Vol. 11, Iss. 7
Open Access | Times Cited: 1
Payam Dibaeinia, Abhishek Ojha, Saurabh Sinha
Science Advances (2025) Vol. 11, Iss. 7
Open Access | Times Cited: 1
Data-driven model discovery and model selection for noisy biological systems
Xiaojun Wu, MeiLu McDermott, Adam L. MacLean
PLoS Computational Biology (2025) Vol. 21, Iss. 1, pp. e1012762-e1012762
Open Access
Xiaojun Wu, MeiLu McDermott, Adam L. MacLean
PLoS Computational Biology (2025) Vol. 21, Iss. 1, pp. e1012762-e1012762
Open Access
Mapping of Biological Data onto the Gene Regulatory Network Using Bioinformatics Approach
Shashikala, Shazia Haider, Vibha Rani
Advances in Science, Technology & Innovation/Advances in science, technology & innovation (2025), pp. 243-250
Closed Access
Shashikala, Shazia Haider, Vibha Rani
Advances in Science, Technology & Innovation/Advances in science, technology & innovation (2025), pp. 243-250
Closed Access
geneRNIB: a living benchmark for gene regulatory network inference
Jalil Nourisa, Antoine Passemiers, Marco Stock, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Jalil Nourisa, Antoine Passemiers, Marco Stock, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Large-scale knowledge graph representations of disease processes
Matti Hoch, Shailendra Gupta, Olaf Wolkenhauer
Current Opinion in Systems Biology (2024) Vol. 38, pp. 100517-100517
Open Access | Times Cited: 3
Matti Hoch, Shailendra Gupta, Olaf Wolkenhauer
Current Opinion in Systems Biology (2024) Vol. 38, pp. 100517-100517
Open Access | Times Cited: 3
Preponderance of generalized chain functions in reconstructed Boolean models of biological networks
Suchetana Mitra, Priyotosh Sil, Ajay Subbaroyan, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 2
Suchetana Mitra, Priyotosh Sil, Ajay Subbaroyan, et al.
Scientific Reports (2024) Vol. 14, Iss. 1
Open Access | Times Cited: 2
Inferring Gene Regulatory Networks of ALS from Blood Transcriptome Profiles
Xena Giada Pappalardo, Giorgio Jansen, Matteo N. Amaradio, et al.
Heliyon (2024) Vol. 10, Iss. 23, pp. e40696-e40696
Open Access | Times Cited: 1
Xena Giada Pappalardo, Giorgio Jansen, Matteo N. Amaradio, et al.
Heliyon (2024) Vol. 10, Iss. 23, pp. e40696-e40696
Open Access | Times Cited: 1
MOSim: bulk and single-cell multi-layer regulatory network simulator
Carolina Monzó, Maider Aguerralde‐Martin, Carlos Martínez-Mira, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 11
Carolina Monzó, Maider Aguerralde‐Martin, Carlos Martínez-Mira, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2018)
Open Access | Times Cited: 11
Female reproductive molecules—Still much to learn
Sonja Grath, Mareike Koppik, Claudia Fricke
Advances in insect physiology (2024), pp. 49-103
Closed Access
Sonja Grath, Mareike Koppik, Claudia Fricke
Advances in insect physiology (2024), pp. 49-103
Closed Access
A Causal Regulation Modeling Algorithm for Temporal Events with Application to Escherichia coli’s Aerobic to Anaerobic Transition
Yi-Gang Chen, Run-Bo Mao, Jiatong Xu, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 11, pp. 5654-5654
Open Access
Yi-Gang Chen, Run-Bo Mao, Jiatong Xu, et al.
International Journal of Molecular Sciences (2024) Vol. 25, Iss. 11, pp. 5654-5654
Open Access
Integrating QTL Mapping and Transcriptomics to Decipher the Genetic Architecture of Sterol Metabolism in Brassica napus L
Yiyi Xiong, Guangyuan Lu, Huaixin Li, et al.
Horticulture Research (2024) Vol. 11, Iss. 9
Open Access
Yiyi Xiong, Guangyuan Lu, Huaixin Li, et al.
Horticulture Research (2024) Vol. 11, Iss. 9
Open Access
Data-driven inference of Boolean networks from transcriptomes to predict cellular differentiation and reprogramming
Stéphanie Chevalier, Julia C. Becker, Yujuan Gui, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Stéphanie Chevalier, Julia C. Becker, Yujuan Gui, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access
Towards a Surrogate-assisted PALLAS algorithm for Gene Regulatory Network Inference
Hugo de Andrade Amorim Neto, Luis Loo, Marcelo Gomes Pereira de Lacerda, et al.
(2024), pp. 119-130
Closed Access
Hugo de Andrade Amorim Neto, Luis Loo, Marcelo Gomes Pereira de Lacerda, et al.
(2024), pp. 119-130
Closed Access
Mapping the landscape of lineage-specific dynamic regulation of gene expression using single-cell transcriptomics and application to genetics of complex disease
Hanna Abe, P. Charles Lin, Dan Zhou, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Hanna Abe, P. Charles Lin, Dan Zhou, et al.
medRxiv (Cold Spring Harbor Laboratory) (2023)
Open Access | Times Cited: 1
Quantitative Modelling in Stem Cell Biology and Beyond: How to Make Best Use of It
Philip Greulich
Current Stem Cell Reports (2023) Vol. 9, Iss. 4, pp. 67-76
Open Access | Times Cited: 1
Philip Greulich
Current Stem Cell Reports (2023) Vol. 9, Iss. 4, pp. 67-76
Open Access | Times Cited: 1
